View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15960_low_2 (Length: 725)
Name: NF15960_low_2
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_2 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 141 - 704
Target Start/End: Complemental strand, 46452067 - 46451503
Alignment:
| Q |
141 |
agaaatctaatacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatct |
240 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46452067 |
agaaatctattacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatct |
46451968 |
T |
|
| Q |
241 |
gaagacataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatg |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46451967 |
gaagacataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatg |
46451868 |
T |
|
| Q |
341 |
gaattccaccaccagatatttgatcaaacaaaccctgtccatttgctatttccacccccattgctgctacaaaaccaatcatagccaaccttccattgat |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46451867 |
gaattccaccaccagatatttgatcaaacaaaccctgtccttttgctatttccacccccattgctgctacaaaaccaatcatagccaaccttccattgat |
46451768 |
T |
|
| Q |
441 |
tctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgccatattttcatcattattatttattaaaaaggtctcataaat |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||| |
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|
| T |
46451767 |
tctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgccatattatcatcatcattatttattaaaagggtctcataaat |
46451668 |
T |
|
| Q |
541 |
tttgacttaatttagtactttgcaaaattaat-ttctttcacataattaagaacaaacaaagataattttatttactagtatgctcacctttggtgaacg |
639 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
46451667 |
tttgaccaaatttagtaatttgcaaaattaatcttctttcacataattaagaaaaaataaagataattttatttactactatgctcacctttggtgaacg |
46451568 |
T |
|
| Q |
640 |
agtataagttggttgtggttgtggtggtggagttggtgctgatgttggtgtaattgggtctacag |
704 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46451567 |
agtataagttggttgtggttgtggtggtggagttggtgctgatgttggtgtaattgggtctacag |
46451503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 704
Target Start/End: Complemental strand, 46463175 - 46462480
Alignment:
| Q |
1 |
agtataagggaactattacattcacttgaaaaaaggataattnnnnnnntctcaaagaagaaactatatgacaatatacacagttccatatattggtttc |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46463175 |
agtataagagaactattacattcacttgaaaaaaggataattaaaaaaatctcaaagaagaaactatatgacaatatacacagttccatatattggtttc |
46463076 |
T |
|
| Q |
101 |
taacaaaaatctacagattttaattcattccctatagaacagaaatctaatacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
46463075 |
taacaaaaatctacagattttaattcattccctatagaacagaaatctattacacaagggaggtacccttaacatactctgtaaaggccaaagcaatcaa |
46462976 |
T |
|
| Q |
201 |
acccaacatagcaattcttccattccatagttctgcatctgaagacataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46462975 |
acccaacatagcaattcttccattccatagttctgcatctgaagacataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaa |
46462876 |
T |
|
| Q |
301 |
gaagcaagtgacaacaacacacttgtccccaagaaccatggaattccaccaccagatatttgatcaaacaaaccctgtccatttgctatttccaccccca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
46462875 |
gaagcaagtgacaacaacacacttgtccccaagaaccatggaattccaccaccagatatttgatcaaacaaaccctgtccttttgctatttccaccccca |
46462776 |
T |
|
| Q |
401 |
ttgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgcca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
46462775 |
ttgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaattttgtgctcatctgcca |
46462676 |
T |
|
| Q |
501 |
tattttcatcattattatttattaaaaaggtctcataaattttgacttaatttagtactttgcaaaattaatttctttcacataattaagaacaaacaaa |
600 |
Q |
| |
|
||||||||| |||| | ||| ||||| || || ||||||||| | || |||| |||||||| || ||| |||| |||| |||| ||| ||||||| |
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|
| T |
46462675 |
tattttcattatta-aaattaataaaagggcctaataaattttaaacaaaattagcactttgcataactaa--tcttgcacacaattcagagaaaacaaa |
46462579 |
T |
|
| Q |
601 |
gataattt-tatttactagtatgctcacctttggtgaacgagtataagttggttgtggttgtggtggtggagttggtgctgatgttggtgtaattgggtc |
699 |
Q |
| |
|
||| |||| | ||| ||| ||||||||||||||||| ||||||||| | || |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
46462578 |
gatgatttatttttgctactatgctcacctttggtgcacgagtatagg------ctgattgtggtggtggagttggtgctgatgttggtgtaattgaatc |
46462485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 141 - 701
Target Start/End: Original strand, 46344489 - 46345041
Alignment:
| Q |
141 |
agaaatctaatacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatct |
240 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46344489 |
agaaatctattacacaagggaggtacccttaacatactctgtaaaggccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatct |
46344588 |
T |
|
| Q |
241 |
gaagacataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatg |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46344589 |
gaagacataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatg |
46344688 |
T |
|
| Q |
341 |
gaattccaccaccagatatttgatcaaacaaaccctgtccatttgctatttccacccccattgctgctacaaaaccaatcatagccaaccttccattgat |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46344689 |
gaattccaccaccagatatttgatcaaacaaaccctgtccttttgctatttccacccccattgctgctacaaaaccaatcatagccaaccttccattgat |
46344788 |
T |
|
| Q |
441 |
tctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgccatattttcatcattattatttattaaaaaggtctcataaat |
540 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||| ||||| || || |||||| |
|
|
| T |
46344789 |
tctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgccatattttcattatta-aaattaataaaagggcctaataaat |
46344887 |
T |
|
| Q |
541 |
tttgacttaatttagtactttgcaaaattaatttctttcacataattaagaacaaacaaagataattt-tatttactagtatgctcacctttggtgaacg |
639 |
Q |
| |
|
||| | || |||| |||||||| || ||| |||| |||| |||| ||| |||||||||| |||| | ||| ||| ||||||||||||||||| ||| |
|
|
| T |
46344888 |
tttaaacaaaattagcactttgcataactaa--tcttgcacacaattcagagaaaacaaagatgatttatttttgctactatgctcacctttggtgcacg |
46344985 |
T |
|
| Q |
640 |
agtataagttggttgtggttgtggtggtggagttggtgctgatgttggtgtaattgggtcta |
701 |
Q |
| |
|
|||||| | || |||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
46344986 |
agtatagg------ctgattgtggtggtggagttggtgctgatggtgttgtaattgggtcta |
46345041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 151 - 546
Target Start/End: Complemental strand, 46471652 - 46471257
Alignment:
| Q |
151 |
tacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacataa |
250 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||| | |
|
|
| T |
46471652 |
tacacaagggcagtacccttaacatattctgtaacagccagagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatga |
46471553 |
T |
|
| Q |
251 |
caccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccacc |
350 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| || ||||||| ||||||||||| || ||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
46471552 |
taccttttgacttagactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccacc |
46471453 |
T |
|
| Q |
351 |
accagatatttgatcaaacaaaccctgtccatttgctatttccacccccattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggt |
450 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46471452 |
accagatatttgatcgaacaaaccctgcccttttgctaattccacccccattgcagatacaaaaccaatcatagccaaccttccattgattctttcaggt |
46471353 |
T |
|
| Q |
451 |
gctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgccatattttcatcattattatttattaaaaaggtctcataaattttgac |
546 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||| | | ||||| |||| | ||| | |||||||||| ||||||||| |
|
|
| T |
46471352 |
gctgccccaccaaaagccatcaaatccgaaaactttgtgcttatctgccattatataatcatcattaatcatttagaaggtctcattaattttgac |
46471257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 151 - 501
Target Start/End: Complemental strand, 46466447 - 46466097
Alignment:
| Q |
151 |
tacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacataa |
250 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||| | |
|
|
| T |
46466447 |
tacacaagggcagtacccttaacatattctgtaacagccagagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatga |
46466348 |
T |
|
| Q |
251 |
caccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccacc |
350 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| || ||||||| ||||||||||| || ||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
46466347 |
taccttttgacttagactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccacc |
46466248 |
T |
|
| Q |
351 |
accagatatttgatcaaacaaaccctgtccatttgctatttccacccccattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggt |
450 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46466247 |
accagatatttgatcgaacaaaccctgcccttttgctaattccacccccattgcagatacaaaaccaatcatagccaaccttccattgattctttcaggt |
46466148 |
T |
|
| Q |
451 |
gctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgccat |
501 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
46466147 |
gctgccccaccaaaagccatcaaatccgaaaactttgtgcttatctgccat |
46466097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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