View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_low_20 (Length: 427)
Name: NF15960_low_20
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 11 - 423
Target Start/End: Original strand, 9370830 - 9371242
Alignment:
| Q |
11 |
cacagaatctatcatagagatgcaaatgtattatttaattgacatgccaaccaattaaacttatgtatctcacatggtatttctatgttagtgtgccctt |
110 |
Q |
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| T |
9370830 |
cacagaatctatcatagagatgcaaatgtattatttaattgacatgccaaccaattaaacttatgtatctcacatggtatttctatgttagtgtgccctt |
9370929 |
T |
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| Q |
111 |
tctctaatgtttctattattattcctataagtattattataaacttcaaaagaatccaagaaaatttgttacaaacatccgtctgatttgcattggttat |
210 |
Q |
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| T |
9370930 |
tctctaatgtttctattattattcctataagtattattataaacttcaaaagaatccaataaaatttgttacaaacatccgtctgatttgcattggttat |
9371029 |
T |
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| Q |
211 |
attggtcggtgtggggaccaaattgtagaattattctttgagttttggtatctctgttccaaaaatctactcaggaatccacgtactatacccatgcact |
310 |
Q |
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| T |
9371030 |
attggtcggtgtggggaccaaattgtagaattattctttgagttttggtatctctgttccagaaatctactcaggaatccacgtactatacccatgcact |
9371129 |
T |
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| Q |
311 |
ttcatccaaatcttgtacttgttttcaagtgttatatatatacaaaatcttcttctaatcactaagtatttttctctgacatggtggatctcatcaagaa |
410 |
Q |
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| T |
9371130 |
ttcatccaaatcttgtacttgtttccaagtgttatatatatacaaaatcttcttctaatcactaagtatttttctctgacatggtggatctcatcaagaa |
9371229 |
T |
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| Q |
411 |
tatggagtggaaa |
423 |
Q |
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| T |
9371230 |
tatggagtggaaa |
9371242 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 33820319 - 33820277
Alignment:
| Q |
179 |
ttacaaacatccgtctgatttgcattggttatattggtcggtg |
221 |
Q |
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| T |
33820319 |
ttacaaacatccgtctgatttgcgttggttatattggtcggtg |
33820277 |
T |
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