View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_low_21 (Length: 421)
Name: NF15960_low_21
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_21 |
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| [»] scaffold0074 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 9103044 - 9103416
Alignment:
| Q |
1 |
gacatttatattcttggagttatgattttagagattgttgctgcaaagattcatgcacacgcgcttgcagcattggagctttgtgcattttctttgcatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
9103044 |
gacatttatattcttggagttatgattttagagattgttgctgcaaagattcgtgcacatgcgcttgcagcattggagcttcgtgcattttctttgcatg |
9103143 |
T |
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| Q |
101 |
aagcacaatgaactcatttttaatagccattgctgtgggaccaatatagctcactttaagtgctagggacgaaagctggggggaacaaaccttcaggata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9103144 |
aagcacaatgaactcatttttaatagccattgctgtgggaccaatatagctcactttaagtgctagggacgaaagttggggggaacaaaccttcaggata |
9103243 |
T |
|
| Q |
201 |
gaaagaaatccacataacaatgaccttattttctctcccgtttcagaacaagcttaggaggacaatttatttattttgtctttcgaaatcctctgtcaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||| ||||||||||| |
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| T |
9103244 |
gaaagaaatccacataacaatgaccttattttctctcccgtttcagaacaagcataggaggacaatttatttattttgcctttggaaaccctctgtcaat |
9103343 |
T |
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| Q |
301 |
gaggcaacgacagagacacatacaccggacacgatactgaaacactgacatctatattaatttaaacgaatta |
373 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9103344 |
gaggcaacgacagagagacatacaccggacacgatactgaaacactgacatctatattaatttaaacgaatta |
9103416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 49922 - 49970
Alignment:
| Q |
1 |
gacatttatattcttggagttatgattttagagattgttgctgcaaaga |
49 |
Q |
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| T |
49922 |
gacatttatagttttggagttatgcttttagagattattgctggaaaga |
49970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7456 - 7504
Alignment:
| Q |
1 |
gacatttatattcttggagttatgattttagagattgttgctgcaaaga |
49 |
Q |
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|||||||||| | ||||||||||| ||||||||||| |||||| ||||| |
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| T |
7456 |
gacatttatagttttggagttatgcttttagagattattgctggaaaga |
7504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18990825 - 18990777
Alignment:
| Q |
1 |
gacatttatattcttggagttatgattttagagattgttgctgcaaaga |
49 |
Q |
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|||||||||| | ||||||||||| ||||||||||| |||||| ||||| |
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| T |
18990825 |
gacatttatagttttggagttatgcttttagagattattgctgaaaaga |
18990777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18995537 - 18995489
Alignment:
| Q |
1 |
gacatttatattcttggagttatgattttagagattgttgctgcaaaga |
49 |
Q |
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|||||||||| | ||||||||||| ||||||||||| |||||| ||||| |
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| T |
18995537 |
gacatttatagttttggagttatgcttttagagattattgctggaaaga |
18995489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20235873 - 20235825
Alignment:
| Q |
1 |
gacatttatattcttggagttatgattttagagattgttgctgcaaaga |
49 |
Q |
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|||||||||| | ||||||||||| ||||||||||| |||||| ||||| |
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| T |
20235873 |
gacatttatagttttggagttatgcttttagagattattgctggaaaga |
20235825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22129857 - 22129809
Alignment:
| Q |
1 |
gacatttatattcttggagttatgattttagagattgttgctgcaaaga |
49 |
Q |
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|||||||||| | ||||||||||| ||||||||||| |||||| ||||| |
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| T |
22129857 |
gacatttatagttttggagttatgcttttagagattattgctggaaaga |
22129809 |
T |
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