View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_low_22 (Length: 418)
Name: NF15960_low_22
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 7 - 401
Target Start/End: Complemental strand, 11584801 - 11584407
Alignment:
| Q |
7 |
cgagtgagaagaatgagaatgattgtttaccgtatcctggagtcttgttttggcaattgagggagccgtgttggtgcgtcacttatcaactaaagtcgct |
106 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11584801 |
cgagtgatcagaatgagaatgattgtttaccgtaccctggagtcttgttttggcaattgagggagccatgttggtgcgtcacttatcaactaaagtcgct |
11584702 |
T |
|
| Q |
107 |
ttgtataaggggatacacaggttgtgagtttgaagttgaatttgtcaaatacttaatattaaatggcggagttttggagaagatttctatttggttttcg |
206 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11584701 |
ttgtataaggggatacacaggtggtgagtttgaagttgaatttgttaagtacttaatattaaatggcggagttttggagaagatttctatttggtttttg |
11584602 |
T |
|
| Q |
207 |
gatgattgttcatgggttgatgttgttgcaacaaattgcttgctttcctatccaaagctctctcctggattgtcatttgatctcaaacctggggtagagt |
306 |
Q |
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|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11584601 |
gaagattgttcatgggttaatgttgttgcaacaaattgcttgctttcctatccaaagctctctcctggattgtcatttgatctcaaacctggggtagagt |
11584502 |
T |
|
| Q |
307 |
atatgagaaaatatggtggtagctttgaaaagtgggtcataaccctaaaataaaatgcttgttggttaaacaatgttttttgttgtgataaatct |
401 |
Q |
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| T |
11584501 |
atatgagaaaatatggtggtagctttgaaaagtgggtcacaaccctaaaataaaatgcttgttggttaaacaatgttttttgttgtgataaatct |
11584407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 30373671 - 30373953
Alignment:
| Q |
16 |
agaatgagaatgattgtttaccgtatcctggagtcttgttttggcaattgagggagccgtgttggtgcgtcacttatcaactaaagtcgctttgtataag |
115 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||| || |||||||| ||| |||| |||| ||| ||||||||||| ||||||||||| |
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| T |
30373671 |
agaatgacaatgcttgtttaccgtatcctggagtcttgttttgggaaaaaagggagccatgtcggtgtgtcatttaccaactaaagtctctttgtataag |
30373770 |
T |
|
| Q |
116 |
gggatacacaggttgtgagtttgaagttgaatttgtcaaatacttaatattaaatggcggagttttggagaagatttctatttggttttcggatgattgt |
215 |
Q |
| |
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|||||| |||||| | ||||||||| ||||||||| || |||||||||||||| || |||||| | ||||| ||| | ||||||||| ||||||||| |
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| T |
30373771 |
gggatatacaggtggagagtttgaatatgaatttgttaagtacttaatattaaacggtggagttatagagaatattacactttggtttttggatgattgc |
30373870 |
T |
|
| Q |
216 |
tcatgggttgatgttgttgcaacaaattgcttgctttcctatccaaagctctctcctggattgtcatttgatctcaaacctgg |
298 |
Q |
| |
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|||||| | ||||| ||||| ||||| ||||||| || |||||||| ||| || |||||| |||||||| |||||||| |
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| T |
30373871 |
tcatggaacaaagttgtagcaactaattgtctgctttcgtacccaaagctttcttctaaattgtcctttgatcttaaacctgg |
30373953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 96 - 360
Target Start/End: Complemental strand, 29785867 - 29785603
Alignment:
| Q |
96 |
ctaaagtcgctttgtataaggggatacacaggttgtgagtttgaagttgaatttgtcaaatacttaatattaaatggcggagttttggagaagatttcta |
195 |
Q |
| |
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|||||||| ||||||||| |||||||| |||| | ||||||||| |||| || || || |||||| ||||||||||||||||| |||| || ||| | | |
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| T |
29785867 |
ctaaagtctgtttgtataaagggatacaaaggtggagagtttgaatttgagttcgttaagtacttagtattaaatggcggagttatggataatattacca |
29785768 |
T |
|
| Q |
196 |
tttggttttcggatgattgttcatgggttgatgttgttgcaacaaattgcttgctttcctatccaaagctctctcctggattgtcatttgatctcaaacc |
295 |
Q |
| |
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||||||||| |||||| || || |||| ||| ||||| ||||| || |||| || |||||||| ||||||||| ||||||| ||||| | ||||| |
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| T |
29785767 |
tttggtttttggatgaatgctcgtgggatgaagttgtagcaactgcatgtttgcggtcatatccaaaactctctcctaaattgtcaattgatttgaaacc |
29785668 |
T |
|
| Q |
296 |
tggggtagagtatatgagaaaatatggtggtagctttgaaaagtgggtcataaccctaaaataaa |
360 |
Q |
| |
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|||| |||||||| ||| ||||| ||||||||||| | ||||| | ||||||||| |||| |
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|
| T |
29785667 |
tgggaccgagtatatacaaaagtatggaggtagctttgatgaatgggtgagaaccctaaactaaa |
29785603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 108 - 360
Target Start/End: Original strand, 29965088 - 29965340
Alignment:
| Q |
108 |
tgtataaggggatacacaggttgtgagtttgaagttgaatttgtcaaatacttaatattaaatggcggagttttggagaagatttctatttggttttcgg |
207 |
Q |
| |
|
||||||| |||||||| |||| | ||||||||| |||| || || || |||||||||||||||||||||||| |||| || ||| | |||||||||| || |
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| T |
29965088 |
tgtataaagggatacaaaggtggagagtttgaatttgagttcgtgaagtacttaatattaaatggcggagttatggataatattaccatttggtttttgg |
29965187 |
T |
|
| Q |
208 |
atgattgttcatgggttgatgttgttgcaacaaattgcttgctttcctatccaaagctctctcctggattgtcatttgatctcaaacctggggtagagta |
307 |
Q |
| |
|
|||| |||||||||| ||| ||||| ||||| || |||| || |||||||| ||||||||| ||||||| || || | ||||||||| | ||| | |
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| T |
29965188 |
atgactgttcatgggatgaagttgtagcaactggatgtttgcggtcatatccaaaactctctcctaaattgtcaattaatttgaaacctgggatcgagaa |
29965287 |
T |
|
| Q |
308 |
tatgagaaaatatggtggtagctttgaaaagtgggtcataaccctaaaataaa |
360 |
Q |
| |
|
||| || |||||||| || ||||| | ||||| | |||||||||||||| |
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| T |
29965288 |
tatacagaagtatggtggcagatttgatgaatgggttagaaccctaaaataaa |
29965340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 106 - 360
Target Start/End: Original strand, 29839136 - 29839390
Alignment:
| Q |
106 |
tttgtataaggggatacacaggttgtgagtttgaagttgaatttgtcaaatacttaatattaaatggcggagttttggagaagatttctatttggttttc |
205 |
Q |
| |
|
||||||| | ||||| || |||| | ||||||||| |||||||||| || ||||||||||||||||| |||||| || | || ||| | |||||||||| |
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| T |
29839136 |
tttgtatgaagggatgcaaaggtggagagtttgaacttgaatttgttaagtacttaatattaaatggaggagttatgaataatattacaatttggttttt |
29839235 |
T |
|
| Q |
206 |
ggatgattgttcatgggttgatgttgttgcaacaaattgcttgctttcctatccaaagctctctcctgga-ttgtcatttgatctcaaacctggggtaga |
304 |
Q |
| |
|
||||| || ||||||| ||| || || ||||| || || | || ||||| |||||||| |||| | || || ||||| | |||||| | |||| |
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| T |
29839236 |
agatgactgctcatgggatgaagtagtagcaactgcatgtttacggtcatatccgaagctctc-cctgaaattatctattgatatgaaacctagtataga |
29839334 |
T |
|
| Q |
305 |
gtatatgagaaaatatggtggtagctttgaaaagtgggtcataaccctaaaataaa |
360 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
29839335 |
gtatataagaaaatatggtggtagctttgatgagtgggtccgaaccctaaaataaa |
29839390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 119 - 334
Target Start/End: Complemental strand, 29857222 - 29857007
Alignment:
| Q |
119 |
atacacaggttgtgagtttgaagttgaatttgtcaaatacttaatattaaatggcggagttttggagaagatttctatttggttttcggatgattgttca |
218 |
Q |
| |
|
||||| |||| | ||||||||| ||||||||| || ||||||||||||||||| |||||| || | || ||| | |||||||||| |||||| || ||| |
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|
| T |
29857222 |
atacaaaggtggagagtttgaaattgaatttgctaagtacttaatattaaatggaggagttatgaataatattacaatttggtttttggatgactgctca |
29857123 |
T |
|
| Q |
219 |
tgggttgatgttgttgcaacaaattgcttgctttcctatccaaagctctctcctggattgtcatttgatctcaaacctggggtagagtatatgagaaaat |
318 |
Q |
| |
|
|||| ||| || || ||||| || || | || |||| ||||||||| || ||| || ||||| | |||||| || |||||||||| ||||||| |
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|
| T |
29857122 |
tgggatgaagtcgtagcaactgcatgtttacagtcatatctaaagctctccccgaaattatccattgatttgaaacctaggatagagtatataagaaaat |
29857023 |
T |
|
| Q |
319 |
atggtggtagctttga |
334 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
29857022 |
atggtggtagctttga |
29857007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 360
Target Start/End: Original strand, 29857404 - 29857473
Alignment:
| Q |
291 |
aaacctggggtagagtatatgagaaaatatggtggtagctttgaaaagtgggtcataaccctaaaataaa |
360 |
Q |
| |
|
||||||||| |||| ||||| ||||||||||||||||||||||| |||||||| ||| |||||||||| |
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|
| T |
29857404 |
aaacctgggatagaatatataagaaaatatggtggtagctttgatgagtgggtccgaacactaaaataaa |
29857473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 29857215 - 29857278
Alignment:
| Q |
105 |
ctttgtataaggggatacacaggttgtgagtttgaagttgaatttgtcaaatacttaatattaa |
168 |
Q |
| |
|
|||||||||| |||||||| |||| | ||||||||| ||||||||| || ||||||||||||| |
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|
| T |
29857215 |
ctttgtataaagggatacaaaggtggagagtttgaaattgaatttggtaagtacttaatattaa |
29857278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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