View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_low_24 (Length: 405)
Name: NF15960_low_24
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 43510981 - 43510590
Alignment:
| Q |
1 |
aaactcttaattgatttactcaaatgggtattaaaaagaatggaacataagataatttcaaatctatttgagttgcagcatctcaattattgtatggatt |
100 |
Q |
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| T |
43510981 |
aaactcttaattgatttactgaaatgggtattaaaaagaatggaacataagataatttcaaatctatttgagttgcaacatctcaattattgtatggatt |
43510882 |
T |
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| Q |
101 |
tcatttgnnnnnnngactaatcctcttattataatggaaagagacctactaattagagttcaattgaaaagttaaataaaatgtagttgagacttatttt |
200 |
Q |
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| T |
43510881 |
tcatttgtttttttgtctaatcctcttattataatggaaagagacctactaattagaattcaattgaaa-gttaaataaaatgtagttgagacttatttt |
43510783 |
T |
|
| Q |
201 |
acatcctttagttcatggattaaccattcattcaatattatatagtccttgagagattgccgcacatacccttcacaacaatcacatctaaaggtaagtt |
300 |
Q |
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| T |
43510782 |
acttcctttagttcgtggattaaccattcattcaatattatatagtccttgagagactgccgcacatacccttcacaacaatcacatctaaaggtaagtt |
43510683 |
T |
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| Q |
301 |
taagatcattattatgtaataatgttg--aaaagagtgtgaatctacttaatagttttttacttagatatttatccatatcatttactttcat |
391 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43510682 |
taagatcattattatgtaataatgttgaaaaaagagtgtgaatctacttaatagttttttacttagatatttatccatatcatttactttcat |
43510590 |
T |
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