View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15960_low_25 (Length: 402)
Name: NF15960_low_25
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_25 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 290
Target Start/End: Complemental strand, 33009506 - 33009227
Alignment:
| Q |
8 |
gattatacttccttaaccactgtctaacattctcccgattgattatataattttaggttttgtattataccttcgcatgtctctcttcgtatgttttcat |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||| ||||||| |||||||||||| |
|
|
| T |
33009506 |
gattatacttccttaac---tgtctaacattctcctgattgattatataattataggttttgtattataccttcccatatctctctctgtatgttttcat |
33009410 |
T |
|
| Q |
108 |
ctctgacaaatgatgagagatatatcttacttagtaatttttgatgtctcgctcagttaatttgtatgatagtattaatatccaacagtgggttgtgact |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
33009409 |
ctctgacaaatgacgagagatatatcttacttagtaatttttgatgtctcgctcagttaatttgtatgatagtattaatatctaagagtggattgtgact |
33009310 |
T |
|
| Q |
208 |
ataaatctaactctacgtctatcaactaacatacatgaacgaattactccaaattcgttatctaaaaagtatttgtgaaacac |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33009309 |
ataaatctaactctacgtctatcaactaacatacatgaacgaattactccaaattcgttatctaaaaagtatttgtgaaacac |
33009227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University