View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_low_26 (Length: 401)
Name: NF15960_low_26
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 14442831 - 14442600
Alignment:
| Q |
1 |
attacacatttaaaagaataatgtattagtataacacattaagtacgtaactgatacacatttatgtacgtaatctgttatttttcatttaattttttaa |
100 |
Q |
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| T |
14442831 |
attacacatttaaaagaataatgtattagtataacacattaagtacgtaactgatagacatttatgtacgtaatctgttatttttcatttaattttttaa |
14442732 |
T |
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| Q |
101 |
ggggactaataaagtattcttttgaatgtgtaattagttatggttattgtaattttttaccgatgtaattctcaatgttttgattggttatgcgtaaagt |
200 |
Q |
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| T |
14442731 |
gtggactaataaagtattcttttgaatgtgtaattagttatggttattgtaattttttaccaatgtaattctgaatgttttgattggttatgcgtaaagt |
14442632 |
T |
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| Q |
201 |
cgttttagaatgtcaacctaacaacattaaac |
232 |
Q |
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|||||| ||||||||||||||||||||||||| |
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| T |
14442631 |
cgttttggaatgtcaacctaacaacattaaac |
14442600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 293 - 390
Target Start/End: Complemental strand, 14442539 - 14442442
Alignment:
| Q |
293 |
tgaaaataatgtccactagtcaacatgtgttgtcgtatgtttgtggtcactgatctgctctgttatacaaaacatcaatcctagtaacacaatcctgg |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
14442539 |
tgaaaataatgtccactagtcaacatgtgttgtcgtatgtttgtggtcactgatctggtctgttagacaaaacatcaatcctagtaacacaatcctgg |
14442442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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