View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15960_low_28 (Length: 390)

Name: NF15960_low_28
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15960_low_28
NF15960_low_28
[»] chr5 (3 HSPs)
chr5 (13-372)||(9102701-9103061)
chr5 (171-210)||(27368597-27368636)
chr5 (172-204)||(470001-470033)
[»] chr6 (10 HSPs)
chr6 (149-342)||(22086056-22086251)
chr6 (159-317)||(21968182-21968340)
chr6 (163-317)||(22206838-22206992)
chr6 (163-342)||(18979616-18979797)
chr6 (163-342)||(18990968-18991149)
chr6 (163-317)||(20236013-20236167)
chr6 (163-317)||(22129997-22130151)
chr6 (163-342)||(18995691-18995872)
chr6 (163-317)||(20083912-20084066)
chr6 (163-342)||(24386916-24387097)
[»] scaffold0007 (1 HSPs)
scaffold0007 (163-317)||(7159-7313)
[»] scaffold0074 (1 HSPs)
scaffold0074 (163-317)||(49614-49768)
[»] chr1 (3 HSPs)
chr1 (242-342)||(47593033-47593135)
chr1 (242-317)||(47607325-47607400)
chr1 (173-208)||(47698490-47698525)
[»] chr8 (1 HSPs)
chr8 (241-300)||(10401677-10401736)


Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 372
Target Start/End: Complemental strand, 9103061 - 9102701
Alignment:
Q  13 tccaagaatataaatgtcccatttttcagaaatctgttcaaacatcacatattctggagacatattttagccactctattaaaaaa-caatattaattta 111  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9103061 tccaagaatataaatgtcctatttttcagaaatctgttcatacatcacatattctggagacatattttagccactctattaaaaaaacaatattaattta 9102962  T
Q  112 actgaaatgtaccttaattgagaagaactcaaaaaatataacaaaagagtgaacattcaaaacttactatgttccaacaattctatttgtacttccttcg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9102961 actgaaatgtaccttaattgagaagaactcaaaaaatataacaaaagagtgaacattcaaaacttactatgctccaacaattctatttgtacttccttcg 9102862  T
Q  212 tcttgacttgctttgtcaatttgagtcaaaccaaaatctaaaattttaggagtcatattttcagctaatggaatattactaggtttgagatcgctatgta 311  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9102861 tcttgatttgctttgtcaatttgagccaaaccaaaatctaaaattttaggagtcatattttcagctaatggaatattactaggtttgagatcgctatgta 9102762  T
Q  312 taacttagacgagatagttcatgcaaataaattctccgagcaattcctcctagtatgttaa 372  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  9102761 taacttagacgagatagttcatgcaaataaattctctgagcaattcctcctagcatgttaa 9102701  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 210
Target Start/End: Original strand, 27368597 - 27368636
Alignment:
Q  171 aaacttactatgttccaacaattctatttgtacttccttc 210  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  27368597 aaacttactaggttccaacgattctatttgtacttccttc 27368636  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 470001 - 470033
Alignment:
Q  172 aacttactatgttccaacaattctatttgtact 204  Q
    ||||||||||||||| |||||||||||||||||    
T  470001 aacttactatgttcccacaattctatttgtact 470033  T

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Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 149 - 342
Target Start/End: Original strand, 22086056 - 22086251
Alignment:
Q  149 ataacaaaagagtgaacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaat 248  Q
    ||||||||  ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  || | | ||| | | |||||||||||    
T  22086056 ataacaaagtagtaaacatttaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttatttcgaccattcgtgccaaaccaaaat 22086155  T
Q  249 ctaaaattttaggagtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt--agacgagatagttcatgcaaataaa 342  Q
    || ||||| ||||| ||||||||||| ||||| |||||||||| ||||||||||| | |||||||||||  || |||||  |||||||||||||||    
T  22086156 ctgaaattctaggaatcatattttcatctaatagaatattacttggtttgagatcacgatgtataactttgagtcgagaatgttcatgcaaataaa 22086251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 159 - 317
Target Start/End: Original strand, 21968182 - 21968340
Alignment:
Q  159 agtgaacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaatctaaaatttt 258  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||  || | | ||  | | ||||||||||||| |||||||    
T  21968182 agtgaacatttgaaacttactatgttccaacaattctatttgtacttccttcctcttgacttatttcgaccatccgtgccaaaccaaaatctgaaatttt 21968281  T
Q  259 aggagtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt 317  Q
    |||| ||||||||||| ||||| |||||||||||||||||||||||| |||||||||||    
T  21968282 aggaatcatattttcatctaatagaatattactaggtttgagatcgcgatgtataactt 21968340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 163 - 317
Target Start/End: Complemental strand, 22206992 - 22206838
Alignment:
Q  163 aacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaatctaaaattttagga 262  Q
    |||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||  ||   ||||| ||| ||||||||||||  |||||||||||    
T  22206992 aacattcaaaacttacaatgttccaactattctatttgtacttccctcgtcttgacttatttcaacaattcgagccaaaccaaaatcagaaattttagga 22206893  T
Q  263 gtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt 317  Q
     ||||||||||| ||||| ||||||| |||||||||||||| | |||||||||||    
T  22206892 atcatattttcatctaatagaatattgctaggtttgagatcccgatgtataactt 22206838  T

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Target: chr6; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 163 - 342
Target Start/End: Original strand, 18979616 - 18979797
Alignment:
Q  163 aacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaatctaaaattttagga 262  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| || |||||||||  ||   ||||| ||| ||||||||||||| |||||||||||    
T  18979616 aacattcaaaacttacaatgttccaacaattctatctgtacttccctcatcttgacttatttcaacaattcgagccaaaccaaaatctgaaattttagga 18979715  T
Q  263 gtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt--agacgagatagttcatgcaaataaa 342  Q
     ||||||||||  ||||| ||||||| |||||||||| ||| | |||||||||||  || |||||  |||||||||||||||    
T  18979716 atcatattttcgtctaatagaatattgctaggtttgacatcccgatgtataactttgagtcgagaatgttcatgcaaataaa 18979797  T

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Target: chr6; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 163 - 342
Target Start/End: Original strand, 18990968 - 18991149
Alignment:
Q  163 aacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaatctaaaattttagga 262  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| || |||||||||  ||    |||| ||| ||||||||||||| |||||||||||    
T  18990968 aacattcaaaacttacaatgttccaacaattctatctgtacttccctcatcttgacttatttcaataattcgagccaaaccaaaatctgaaattttagga 18991067  T
Q  263 gtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt--agacgagatagttcatgcaaataaa 342  Q
     ||||||||||  ||||| ||||||| |||||||||||||| | |||||||||||  || |||||  |||||||||||||||    
T  18991068 atcatattttcgtctaatagaatattgctaggtttgagatcccgatgtataactttgagtcgagaatgttcatgcaaataaa 18991149  T

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Target: chr6; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 163 - 317
Target Start/End: Original strand, 20236013 - 20236167
Alignment:
Q  163 aacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaatctaaaattttagga 262  Q
    |||||||||||||||| |||||||||||||||||||||||||||| || |||||||||  ||   ||||| ||| ||||||||||||  |||||||||||    
T  20236013 aacattcaaaacttacaatgttccaacaattctatttgtacttccctcatcttgacttatttcaacaattcgagccaaaccaaaatcagaaattttagga 20236112  T
Q  263 gtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt 317  Q
     ||||||||||  ||||| ||||||| |||||||||||||| | |||||||||||    
T  20236113 atcatattttcgtctaatagaatattgctaggtttgagatcccgatgtataactt 20236167  T

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Target: chr6; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 163 - 317
Target Start/End: Original strand, 22129997 - 22130151
Alignment:
Q  163 aacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaatctaaaattttagga 262  Q
    |||||||||||||||| |||||||||||||||||||||||||||| || |||||||||  ||   ||||| ||| ||||||||||||  |||||||||||    
T  22129997 aacattcaaaacttacaatgttccaacaattctatttgtacttccctcatcttgacttatttcaacaattcgagccaaaccaaaatcagaaattttagga 22130096  T
Q  263 gtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt 317  Q
     ||||||||||  ||||| ||||||| |||||||||||||| | |||||||||||    
T  22130097 atcatattttcgtctaatagaatattgctaggtttgagatcccgatgtataactt 22130151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 163 - 342
Target Start/End: Original strand, 18995691 - 18995872
Alignment:
Q  163 aacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaatctaaaattttagga 262  Q
    |||||||||||||||| |||||||| |||||||||||||| |||| || ||||||||   ||   ||||| ||| ||||||||||||| |||||||||||    
T  18995691 aacattcaaaacttacaatgttccagcaattctatttgtatttccctcatcttgactaatttcaacaattcgagccaaaccaaaatctgaaattttagga 18995790  T
Q  263 gtcatattttcagctaatggaatattactaggtttgagatcgctatgtataac--ttagacgagatagttcatgcaaataaa 342  Q
     ||||||||||   |||| ||||||| |||||||||||||| | |||||||||  |||| |||||  |||||||||||||||    
T  18995791 atcatattttcgtataatagaatattgctaggtttgagatcccgatgtataacttttagtcgagaatgttcatgcaaataaa 18995872  T

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Target: chr6; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 163 - 317
Target Start/End: Original strand, 20083912 - 20084066
Alignment:
Q  163 aacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaatctaaaattttagga 262  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| || |||||||||  ||   ||||| ||| ||||||||||||| ||||||||| |    
T  20083912 aacattcaaaacttacaatgttccaacaattctatctgtacttccctcatcttgacttatttcaacaattcgagccaaaccaaaatctgaaattttagta 20084011  T
Q  263 gtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt 317  Q
     ||||||||||  ||||| ||||||| |||||||||||||| |  ||||||||||    
T  20084012 atcatattttcgtctaatagaatattgctaggtttgagatcccggtgtataactt 20084066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 163 - 342
Target Start/End: Complemental strand, 24387097 - 24386916
Alignment:
Q  163 aacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaatctaaaattttagga 262  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| || | |||| ||  ||   ||||| ||| |||| |||||| | ||||||||| |    
T  24387097 aacattcaaaacttacaatgttccaacaattctatctgtacttccctcatattgaattatttcaacaattcgagccaaaacaaaatatgaaattttagaa 24386998  T
Q  263 gtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt--agacgagatagttcatgcaaataaa 342  Q
     ||||||||||  ||||| ||||||| |||||||||||||  | |||||||||||  || |||||  |||||||||||||||    
T  24386997 atcatattttcgtctaatagaatattgctaggtttgagattccgatgtataactttaagtcgagaatgttcatgcaaataaa 24386916  T

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Target: scaffold0007 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 163 - 317
Target Start/End: Complemental strand, 7313 - 7159
Alignment:
Q  163 aacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaatctaaaattttagga 262  Q
    ||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||  ||   ||||  ||| ||||||||||||| |||||||||||    
T  7313 aacattcaaaacttactatgttccagcaattctatttgtatttccctcatcttgacttatttcaacaatccgagccaaaccaaaatctgaaattttagga 7214  T
Q  263 gtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt 317  Q
     ||||||||||  ||||| ||||||| |||||||||||||| | |||||||||||    
T  7213 atcatattttcgtctaatagaatattgctaggtttgagatcccgatgtataactt 7159  T

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Target: scaffold0074 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 163 - 317
Target Start/End: Complemental strand, 49768 - 49614
Alignment:
Q  163 aacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaatctaaaattttagga 262  Q
    |||||||||||||||| |||||||| |||||||||||||| |||| || ||||||||   ||   ||||| ||| ||||||||||||| |||||||||||    
T  49768 aacattcaaaacttacaatgttccagcaattctatttgtatttccctcatcttgactaatttcaacaattcgagccaaaccaaaatctgaaattttagga 49669  T
Q  263 gtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt 317  Q
     ||||||||||    ||| ||||||| |||||||||||||| | |||||||||||    
T  49668 atcatattttcgttcaatagaatattgctaggtttgagatcccgatgtataactt 49614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 342
Target Start/End: Complemental strand, 47593135 - 47593033
Alignment:
Q  242 ccaaaatctaaaattttaggagtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt--agacgagatagttcatgcaaat 339  Q
    ||||||||| | ||||||||| ||||||||||| | | | ||| |||||||||||||||||| | |||||||||||  ||||||||   |||||||||||    
T  47593135 ccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttgagacgagaatattcatgcaaat 47593036  T
Q  340 aaa 342  Q
    |||    
T  47593035 aaa 47593033  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 47607400 - 47607325
Alignment:
Q  242 ccaaaatctaaaattttaggagtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt 317  Q
    ||||||||| | ||||||||| |||||| |||| |||||  ||||||||||||||| ||||| | |||||||||||    
T  47607400 ccaaaatctgagattttaggattcatatgttcatctaataaaatattactaggtttaagatcacgatgtataactt 47607325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 47698525 - 47698490
Alignment:
Q  173 acttactatgttccaacaattctatttgtacttcct 208  Q
    ||||||||||||||||||||||||||||||||||||    
T  47698525 acttactatgttccaacaattctatttgtacttcct 47698490  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 10401677 - 10401736
Alignment:
Q  241 accaaaatctaaaattttaggagtcatattttcagctaatggaatattactaggtttgag 300  Q
    |||||||||| | ||||| ||| ||||||||||| |||||  ||||||||||||||||||    
T  10401677 accaaaatctgatatttttggaatcatattttcatctaataaaatattactaggtttgag 10401736  T

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