View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_low_29 (Length: 389)
Name: NF15960_low_29
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 9e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 212 - 372
Target Start/End: Original strand, 20365106 - 20365266
Alignment:
| Q |
212 |
gaagttgagatcctcttcatttcccaaaagaaatggagaacactattgatcagagagatacacataagtctgatataagtaagacccaccttttcaaaaa |
311 |
Q |
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| T |
20365106 |
gaagttgagatcctcttcatttcccaaaagaaatggagaacactattgatcagagagatacacataagtctgatataagtaagacccaccttttcaaaaa |
20365205 |
T |
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| Q |
312 |
ttcaaaaatatgggtcctaccaataaaaatttaatttttaagctcgtctactatttcaatt |
372 |
Q |
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| T |
20365206 |
ttcaaaaatatgggtcctaccaataaaaatttaatttttaagctcgtctactatttcaatt |
20365266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 20364911 - 20365078
Alignment:
| Q |
15 |
tatagccgctatttaataacacacactttgtagtatatcacagaacaatagcggtcagttcaaaatatcctctattgtactaactcctcttatcccatat |
114 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20364911 |
tatagcggctatttaataacac--actttgtagtatatcacagaacaatagcggtctgttcaaaatatcctctattgtactaactcctcttatcccatat |
20365008 |
T |
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| Q |
115 |
tttaacaaacttctcagtatcttatatcatacgagtatgtgtgcgaatcagtatgttcgcgtattatcag |
184 |
Q |
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| T |
20365009 |
tttaacaaacttctcagtatcttatatcatacgagtatgtgtgcgaatcagtatgttcgcgtattatcag |
20365078 |
T |
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