View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_low_30 (Length: 387)
Name: NF15960_low_30
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 34947357 - 34947002
Alignment:
| Q |
1 |
catattcgattcatctctatattaattttagtaggacaatttaacttctttnnnnnnnnnnnnnnnnnnngagttaggagcgattttcttcctatgtgag |
100 |
Q |
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| T |
34947357 |
catagtcgattcatctccatattaattttagtaggacaatttaacttcttt------------aaaaaaagagttaggagcgattttctttctatgtgag |
34947270 |
T |
|
| Q |
101 |
ataagattggcatttatagcacgtgccaaagtctatgatattttgagattgatatgacacattgccttaaaattcgtccaagcttcataagacatacctt |
200 |
Q |
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| T |
34947269 |
ataagattggcatttatagcacgtgcc-aagtctatgatattttgagattgatatgacacattgccttaaaattcgtccaagcttcataagacatacctt |
34947171 |
T |
|
| Q |
201 |
aaatgttttcaccactagctagcaataagacacacataaatttcctgcatatttacatactgtgataaaagttttcacaacttgctagcaatacacacac |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34947170 |
aaatgttttcgccactagctagcaataagacacacataaatttcctgcatatttacatactgtgataaaagttttcacaacttgctagcaatacacacac |
34947071 |
T |
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| Q |
301 |
atatataatagtaacagttgaaaggaatttattaacttatttacattcacatgagagagcaagcatgaacatt |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34947070 |
----ataatagtaacagttgaaaggaatttattaacttatttacattcacatgagagagcaagcatgaacatt |
34947002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 23942573 - 23942525
Alignment:
| Q |
2 |
atattcgattcatctctatattaattttagtaggacaatttaacttctt |
50 |
Q |
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||||||||||| |||||||| |||||||||||| ||||||||||||| |
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| T |
23942573 |
atattcgattctcctctatatcaattttagtaggttaatttaacttctt |
23942525 |
T |
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