View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15960_low_31 (Length: 383)

Name: NF15960_low_31
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15960_low_31
NF15960_low_31
[»] chr2 (1 HSPs)
chr2 (45-383)||(34657657-34657995)


Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 45 - 383
Target Start/End: Complemental strand, 34657995 - 34657657
Alignment:
Q  45 caattttggtaacatttaaaaccaaaaaatgcaagtgcgagtttgaattgacaatgaatttagcatatatgagtttagcagaatcacatagtaccaccgg 144  Q
    ||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  34657995 caattttggtaacatttaaaaccaaaaaatgtaagtgcatgtttgaattgacaatgaatttagcatatatgagtttagcagaatcacagagtaccactgg 34657896  T
Q  145 taccgtgattttgacaaaatctattgaccagagctgtaacaaaattacggtgtcactatgatcttgtgaaactcagtgtaatttcaaatatgcagtaagt 244  Q
    || |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34657895 tatcgtgattttgacaaaacctatcgaccagagctgtaacaaaattacggtgtcactatgatcttgtgaaactcagtgtaatttcaaatatgcagtaagt 34657796  T
Q  245 taaatgatttttcataaacaaagaagacttacggggtaactttgatcggtagcataagagatgtaatgttcccatgannnnnnngagtctattttgataa 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||       ||||||||||||||||    
T  34657795 taaatgatttttcataaacaaagaagacttacggggtaactttgattggtagcataagagatgtaatgttcccatgatttttttgagtctattttgataa 34657696  T
Q  345 ccttagactttttgagatattcttggccctccatttctt 383  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34657695 ccttagactttttgagatattcttggccctccatttctt 34657657  T

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