View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_low_33 (Length: 367)
Name: NF15960_low_33
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 23 - 359
Target Start/End: Complemental strand, 25330867 - 25330531
Alignment:
| Q |
23 |
cataatatcctttgttgggtaagaaatcaacacttggcattaattataccttacgtgtaaagtaagctcttgaataaagtaaagatgctcttgctataca |
122 |
Q |
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| T |
25330867 |
cataatatcctttgttgggtaagaaatcaacacttggcattaattataccttacgtgtaaagtaagctcttgaataaagtaaagatgctcttgctatata |
25330768 |
T |
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| Q |
123 |
aagaaatgaaatgcatataagcttgattaattgactaaaaaacactactatctttaaccataagcacaatcactatggctttgatcttgaagaannnnnn |
222 |
Q |
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| T |
25330767 |
aagaaatgaaatgcatataagcttgattaattgactaaaaaacactattatcttaaaccataagcacaatcactatggctttgatcttgaagaatttttc |
25330668 |
T |
|
| Q |
223 |
nctaacagaattattaactgctgcagcagtgttagtagtaatccttttctctagtgcttatagtttgaacaaagatgagttcccttctgactttgtgttt |
322 |
Q |
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| T |
25330667 |
tttgacagaattattaactgctgcagcagtgttagtagtaatccttttctctagtgcttatagtttgaacaaagatgaattcccttctgactttgtgttt |
25330568 |
T |
|
| Q |
323 |
ggtgtatcaacttcagcttatcaagtttgttcatctc |
359 |
Q |
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| T |
25330567 |
ggtgtatcaacttcagcttaccaagtttgttcttctc |
25330531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 113 - 354
Target Start/End: Original strand, 9988304 - 9988544
Alignment:
| Q |
113 |
ttgctatacaaagaaatgaaatgcatataagcttgattaattgactaaaaaacactactatctttaaccataagcacaatcactatggctttgatcttga |
212 |
Q |
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| T |
9988304 |
ttgctatacaacgaaatgaaatgcatataaggttgattaattgactaaaaaacactactagcttaaaccataagcacaatcaatatggctttgatcttga |
9988403 |
T |
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| Q |
213 |
agaannnnnnnctaacagaattattaactgctgcagcagtgttagtagtaatcct-tttctctagtgcttatagtttgaacaaagatgagttccc-ttct |
310 |
Q |
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| T |
9988404 |
agaactttta--tgaatgaactattaactgttgcagcagtattattagcaatcctccttct-ttgtgcttatagtttgaacaaagatgagttccctttcc |
9988500 |
T |
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| Q |
311 |
gactttgtgtttggtgtatcaacttcagcttatcaagtttgttc |
354 |
Q |
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| T |
9988501 |
aactttgtgtttgttgtatcaacttcagcttaccaattttgttc |
9988544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 229 - 354
Target Start/End: Complemental strand, 25325332 - 25325207
Alignment:
| Q |
229 |
agaattattaactgctgcagcagtgttagtagtaatccttttctctagtgcttatagtttgaacaaagatgagttcccttctgactttgtgtttggtgta |
328 |
Q |
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||||||| ||| || ||||| ||||||| |||||||||| || ||||||||||| |||||| || |||||| ||||||||| ||||||||||||||| |
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| T |
25325332 |
agaattactaaatgttgcagtagtgttactagtaatcctcctccctagtgcttatggtttgagcagagatgaattcccttcttactttgtgtttggtgct |
25325233 |
T |
|
| Q |
329 |
tcaacttcagcttatcaagtttgttc |
354 |
Q |
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| T |
25325232 |
tcaacttcagcttaccaagtttgttc |
25325207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 113 - 359
Target Start/End: Original strand, 21725169 - 21725416
Alignment:
| Q |
113 |
ttgctatacaaagaaatgaaatgcatataagcttgattaattgactaaaaaacactactatctttaaccataagcacaatcactatggctttgatcttga |
212 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| |
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| T |
21725169 |
ttgctatacaacgaaatgaaatgcatataaggttgattaattgactaaaaaacactactagcttaaaccataagcacaatcagtatggctttgatcttga |
21725268 |
T |
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| Q |
213 |
agaannnnnnnctaacagaattattaactgctgcagcagtgttagtagtaatcct-tttctctagtgcttatagtttgaacaaagatgagttccc-ttct |
310 |
Q |
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|||| | | ||| ||||||||| ||||||||| ||| ||| |||||| |||| | ||||||||||||||||||||||||||||||| ||| |
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| T |
21725269 |
agaacttttctatgaatgaactattaactgttgcagcagtattattagcaatcctccttct-ttgtgcttatagtttgaacaaagatgagttccctttcc |
21725367 |
T |
|
| Q |
311 |
gactttgtgtttggtgtatcaacttcagcttatcaagtttgttcatctc |
359 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
21725368 |
gactttgtgtttggtgtatcaacttcagcttaccaagtttgttcttctc |
21725416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 113 - 359
Target Start/End: Original strand, 21804894 - 21805141
Alignment:
| Q |
113 |
ttgctatacaaagaaatgaaatgcatataagcttgattaattgactaaaaaacactactatctttaaccataagcacaatcactatggctttgatcttga |
212 |
Q |
| |
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||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| |
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| T |
21804894 |
ttgctatacaacgaaatgaaatgcatataaggttgattaattgactaaaaaacactactagcttaaaccataagcacaatcagtatggctttgatcttga |
21804993 |
T |
|
| Q |
213 |
agaannnnnnnctaacagaattattaactgctgcagcagtgttagtagtaatcct-tttctctagtgcttatagtttgaacaaagatgagttccc-ttct |
310 |
Q |
| |
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|||| | | ||| ||||||||| ||||||||| ||| ||| |||||| |||| | ||||||||||||||||||||||||||||||| ||| |
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| T |
21804994 |
agaacttttctatgaatgaactattaactgttgcagcagtattattagcaatcctccttct-ttgtgcttatagtttgaacaaagatgagttccctttcc |
21805092 |
T |
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| Q |
311 |
gactttgtgtttggtgtatcaacttcagcttatcaagtttgttcatctc |
359 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
21805093 |
gactttgtgtttggtgtatcaacttcagcttaccaagtttgttcttctc |
21805141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 287 - 359
Target Start/End: Original strand, 14331440 - 14331513
Alignment:
| Q |
287 |
ttgaacaaagatgagttccctt-ctgactttgtgtttggtgtatcaacttcagcttatcaagtttgttcatctc |
359 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
14331440 |
ttgaacaaagatgagttccctttccgactttgtgtttggtgtatcaacttcagcttaccaagtttgttcttctc |
14331513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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