View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15960_low_34 (Length: 366)

Name: NF15960_low_34
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15960_low_34
NF15960_low_34
[»] chr2 (4 HSPs)
chr2 (48-238)||(30782259-30782449)
chr2 (308-349)||(30782519-30782560)
chr2 (175-230)||(30061157-30061212)
chr2 (191-238)||(30245501-30245548)
[»] scaffold1178 (1 HSPs)
scaffold1178 (67-174)||(2225-2332)
[»] chr6 (3 HSPs)
chr6 (101-174)||(14434466-14434539)
chr6 (123-173)||(4479821-4479871)
chr6 (73-114)||(20737891-20737932)
[»] chr8 (4 HSPs)
chr8 (123-174)||(32850563-32850614)
chr8 (123-173)||(37177997-37178047)
chr8 (123-174)||(37173706-37173757)
chr8 (123-173)||(32854858-32854908)
[»] chr3 (1 HSPs)
chr3 (123-174)||(39163943-39163994)
[»] chr1 (1 HSPs)
chr1 (83-174)||(2009522-2009615)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 30782259 - 30782449
Alignment:
Q  48 tagaaagttctaataaaaccctaggaatattaaatgaccctctctagaacttgcagatacatgaatggatttctagatacattaaggaacctagaaatat 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30782259 tagaaagttctaataaaaccctaggaatattaaatgaccctctctagaacttgcagatacatgaatggatttctagatacattaaggaacctaggaatat 30782358  T
Q  148 ggaaaattacaaattatcatttaacacgaacctcaattacgacctgatgcagttgctatgatgatttcagttcaaacccctgcgaaagtaa 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30782359 ggaaaattacaaattatcatttaacacgaacctcaattacgacctgatgcagttgctatgatgatttcagttcaaacccctgcgaaagtaa 30782449  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 308 - 349
Target Start/End: Original strand, 30782519 - 30782560
Alignment:
Q  308 gctctctactagcgagttatgtccagatttgtggtagagagt 349  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  30782519 gctctctactagcgagttatgtccagatttgtggtagagagt 30782560  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 30061157 - 30061212
Alignment:
Q  175 gaacctcaattacgacctgatgcagttgctatgatgatttcagttcaaacccctgc 230  Q
    ||||||||||||||||||||||||| ||||||||||| ||| ||| ||||||||||    
T  30061157 gaacctcaattacgacctgatgcagctgctatgatgacttcggtttaaacccctgc 30061212  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 30245501 - 30245548
Alignment:
Q  191 ctgatgcagttgctatgatgatttcagttcaaacccctgcgaaagtaa 238  Q
    ||||||||||||||||||||| ||||||| |||||||||| |||||||    
T  30245501 ctgatgcagttgctatgatgacttcagtttaaacccctgctaaagtaa 30245548  T

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Target: scaffold1178 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold1178
Description:

Target: scaffold1178; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 2225 - 2332
Alignment:
Q  67 cctaggaatattaaatgaccctctctagaacttgcagatacatgaatggatttctagatacattaaggaacctagaaatatggaaaattacaaattatca 166  Q
    |||||||||||||||||||  ||||| |||||| | ||||||||||| || || |||||| |||||||||||||| ||||||||||||||||||||||||    
T  2225 cctaggaatattaaatgacattctctggaacttactgatacatgaatagacttttagatatattaaggaacctaggaatatggaaaattacaaattatca 2324  T
Q  167 tttaacac 174  Q
    ||||||||    
T  2325 tttaacac 2332  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 14434539 - 14434466
Alignment:
Q  101 cagatacatgaatggatttctagatacattaaggaacctagaaatatggaaaattacaaattatcatttaacac 174  Q
    |||||||||| |  || ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  14434539 cagatacatggagagacttctagatacattaatgaacctaggaatatggaaaattacaaattatcatttaacac 14434466  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 4479821 - 4479871
Alignment:
Q  123 gatacattaaggaacctagaaatatggaaaattacaaattatcatttaaca 173  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4479821 gatacattaaggaacctaggaatatggaaaattacaaattatcatttaaca 4479871  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 20737891 - 20737932
Alignment:
Q  73 aatattaaatgaccctctctagaacttgcagatacatgaatg 114  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  20737891 aatattaaatgaccctatctagaacttgcagatacatgaatg 20737932  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 32850563 - 32850614
Alignment:
Q  123 gatacattaaggaacctagaaatatggaaaattacaaattatcatttaacac 174  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32850563 gatacattaaggaacctaggaatatggaaaattacaaattatcatttaacac 32850614  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 37177997 - 37178047
Alignment:
Q  123 gatacattaaggaacctagaaatatggaaaattacaaattatcatttaaca 173  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37177997 gatacattaaggaacctaggaatatggaaaattacaaattatcatttaaca 37178047  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 37173706 - 37173757
Alignment:
Q  123 gatacattaaggaacctagaaatatggaaaattacaaattatcatttaacac 174  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  37173706 gatacattaaggaacctaggaatatgaaaaattacaaattatcatttaacac 37173757  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 32854858 - 32854908
Alignment:
Q  123 gatacattaaggaacctagaaatatggaaaattacaaattatcatttaaca 173  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  32854858 gatacattaaggaacctaggaatatggaaaatttcaaattatcatttaaca 32854908  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 39163943 - 39163994
Alignment:
Q  123 gatacattaaggaacctagaaatatggaaaattacaaattatcatttaacac 174  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39163943 gatacattaaggaacctaggaatatggaaaattacaaattatcatttaacac 39163994  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 2009615 - 2009522
Alignment:
Q  83 gaccctctctagaacttgcag---atacatgaatggatttctagatacattaaggaacctagaaatatggaaaattacaaattatcatttaacac 174  Q
    |||||||| ||||||||| ||   ||||||||||| | |||||||||||||| ||||| ||| |||||| |||||| | ||||||||||||||||    
T  2009615 gaccctctttagaacttgtagtcaatacatgaatgaacttctagatacattagggaacttaggaatatgaaaaatttc-aattatcatttaacac 2009522  T

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