View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_low_36 (Length: 358)
Name: NF15960_low_36
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 27024805 - 27025147
Alignment:
| Q |
1 |
attgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagcggggtccaaactgcacccacaagcagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27024805 |
attgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagcggggtccaaactgcacccacaagcagtg |
27024904 |
T |
|
| Q |
101 |
gagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgatctaaatcttcttgctgatattggat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27024905 |
gagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgatctaaatcttcttgctgatattggat |
27025004 |
T |
|
| Q |
201 |
ttgatttaaacaagtttgctgatgatgaaaatctaactcccaaagaagaagcagcaagagattgtttgaaaatatatcttccccatttctattaaatccc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
27025005 |
ttgatttaaacaagtttgctgatgatgaaaatctaactcccaaagaagaagaagcaagagattgtttgaaaatatatcttccccgtttctactaaatccc |
27025104 |
T |
|
| Q |
301 |
attgcaatctatgttccctttactacccaaaagtgcatgaaat |
343 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27025105 |
attgcaatctatgttccctttactacccaaaagtgcatgaaat |
27025147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 33020578 - 33020920
Alignment:
| Q |
1 |
attgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagcggggtccaaactgcacccacaagcagtg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33020578 |
attgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagaggggtccaaactgcacccacaagcagtg |
33020677 |
T |
|
| Q |
101 |
gagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgatctaaatcttcttgctgatattggat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33020678 |
gagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgatctaaatcttcttgctgatattggat |
33020777 |
T |
|
| Q |
201 |
ttgatttaaacaagtttgctgatgatgaaaatctaactcccaaagaagaagcagcaagagattgtttgaaaatatatcttccccatttctattaaatccc |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
33020778 |
ttgatttaaacaagtttgctgatgatgaaaatctaactcccaaagaagaagaagcaagagattgtttgaaaatatatcttccccgtttctactaaatccc |
33020877 |
T |
|
| Q |
301 |
attgcaatctatgttccctttactacccaaaagtgcatgaaat |
343 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33020878 |
attgcaatctatgttccctttactacccaaaagtgcatgaaat |
33020920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 19256558 - 19256883
Alignment:
| Q |
1 |
attgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagcggggtccaaactgcacccacaagcagtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19256558 |
attgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagtggggtccaaactgcacccacaagcagtg |
19256657 |
T |
|
| Q |
101 |
gagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgatctaaatcttcttgctgatattggat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19256658 |
gagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgatctaaatcttcttgctgatattggat |
19256757 |
T |
|
| Q |
201 |
ttgatttaaacaagtttgctgatgatgaaaatctaactcccaaagaagaagcagcaagagattgtttgaaaatatatcttccccatttctattaaatccc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| || |
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|
| T |
19256758 |
ttgatttaaacaagtttgctgatgatgaaaatctaactcccaaagaagaagcagcaagagattgtttgaaaatatatcttccccgtttctactaaattcc |
19256857 |
T |
|
| Q |
301 |
attgcaatctatgttccctttactac |
326 |
Q |
| |
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| |||||||||||||||||||||||| |
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| T |
19256858 |
actgcaatctatgttccctttactac |
19256883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 10118357 - 10118074
Alignment:
| Q |
1 |
attgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagcggggtccaaactgcacccacaagcagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10118357 |
attgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagcggggtccaaactgcacccacaagcagtg |
10118258 |
T |
|
| Q |
101 |
gagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgatctaaatcttcttgctgatattggat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10118257 |
gagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgatctaaatcttcttgctgatattggat |
10118158 |
T |
|
| Q |
201 |
ttgatttaaacaagtttgctgatgatgaaaatctaactcccaaagaagaagcagcaagagattgtttgaaaatatatcttcccc |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10118157 |
ttgatttaaacaagtttgctgatgatgaaaatctaactcccaaagaagaagcagcaagagattgtttgaaaatatatcttcccc |
10118074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 10114917 - 10114860
Alignment:
| Q |
286 |
tttctattaaatcccattgcaatctatgttccctttactacccaaaagtgcatgaaat |
343 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10114917 |
tttctactaaatcccattgcaatctatgttccctttactacccaaaagtgcatgaaat |
10114860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 4890939 - 4890870
Alignment:
| Q |
1 |
attgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacaca |
70 |
Q |
| |
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||||||||||||| |||||||||||| ||| |||||| ||||||||||||||||||||| || ||||||| |
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| T |
4890939 |
attgttggagatgatagttgaggatttactggaaggggaagttgattatgagtttgatattgtagacaca |
4890870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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