View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_low_38 (Length: 346)
Name: NF15960_low_38
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 35684235 - 35684563
Alignment:
| Q |
1 |
tatttcaccttatatactgctttaaccacttttatcataaatgtttatgctatagacacttaattaagctgattatccaaacagagccttaggggagaaa |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
35684235 |
tatttcaccttatatactgctttaaccacttatatcataaatttttatgctatatacacttaattaagctgattatccaaacatatccttaggggagaaa |
35684334 |
T |
|
| Q |
101 |
atgagagctctttctctttcattccatttatcataagaattatatctcttgaaaaggattgttttcatctaaagaattaatcattttacactttttcatt |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
35684335 |
atgagatctctttctctttcattccatttatcataagaattatatctcttgaaaaggatcgttttcatctaaagaattaatcattttacactttttcctt |
35684434 |
T |
|
| Q |
201 |
cacgtagtaacataatatgattacacacacttcaaatcaggactgagatatttataacttattgtgctgtctgaggtaatttgggaagtttttgaattga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35684435 |
cacgtagtaacataatatgattacacacacttcaaatcaggactgatatatttataacttattgtgctgtctgaggtaatttgggaagtttttgaattga |
35684534 |
T |
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| Q |
301 |
attaaaatgtaactaccaatgatcaggtg |
329 |
Q |
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| T |
35684535 |
attaaaatgtaactaccaatgatcaggtg |
35684563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 18512562 - 18512614
Alignment:
| Q |
37 |
ataaatgtttatgctatagacacttaattaagctgattatccaaacagagcct |
89 |
Q |
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| T |
18512562 |
ataaatgtttatgctataagcacttaattaagttgcttatccaagcaaagcct |
18512614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 52734750 - 52734714
Alignment:
| Q |
44 |
tttatgctatagacacttaattaagctgattatccaa |
80 |
Q |
| |
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| T |
52734750 |
tttatgctataaacacttaattaagctgtttatccaa |
52734714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 151 - 329
Target Start/End: Original strand, 20685213 - 20685397
Alignment:
| Q |
151 |
gaaaaggattgttttcatctaaagaattaatcattttacactttttcattcacgtagtaacataatatgattacacacacttcaaatcaggactgagata |
250 |
Q |
| |
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||||| || |||||| ||||||||| |||||||| || |||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| |
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| T |
20685213 |
gaaaatgactgtttttatctaaagagttaatcatcttgcactttttcattcacgtagtaacataatatgatt--acacgcttcaaatcaggactggtata |
20685310 |
T |
|
| Q |
251 |
t-------ttataacttattgtgctgtctgaggtaatttgggaagtttttgaattg-aattaaaatgtaactaccaatgatcaggtg |
329 |
Q |
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| T |
20685311 |
tttctaaattataacttattatgctgtctgaggtaatttgcaatgtttttgaattgaaattaaaatgtaactaccaatgatcaggtg |
20685397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 753347 - 753395
Alignment:
| Q |
37 |
ataaatgtttatgctatagacacttaattaagctgattatccaaacaga |
85 |
Q |
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| T |
753347 |
ataaatgtttatgctataaacacttaattaagttgtttatccaaacaga |
753395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 30237879 - 30237935
Alignment:
| Q |
27 |
cacttttatcataaatgtttatgctatagacacttaattaagctgattatccaaaca |
83 |
Q |
| |
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||||| ||| |||| || |||||||||||||||||||||||| || ||||||||||| |
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| T |
30237879 |
cacttatataataagtgcttatgctatagacacttaattaagttgtttatccaaaca |
30237935 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 31420895 - 31420851
Alignment:
| Q |
27 |
cacttttatcataaatgtttatgctatagacacttaattaagctg |
71 |
Q |
| |
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||||| ||| ||||||| |||||||||| |||||||||||||||| |
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| T |
31420895 |
cacttatataataaatgattatgctataaacacttaattaagctg |
31420851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 16945133 - 16945173
Alignment:
| Q |
44 |
tttatgctatagacacttaattaagctgattatccaaacag |
84 |
Q |
| |
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||||||||||| ||||||||||| |||| |||||||||||| |
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| T |
16945133 |
tttatgctataaacacttaattaggctgtttatccaaacag |
16945173 |
T |
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