View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_low_40 (Length: 330)
Name: NF15960_low_40
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_40 |
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| [»] scaffold0428 (1 HSPs) |
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| [»] scaffold0184 (1 HSPs) |
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| [»] scaffold0078 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 905657 - 905937
Alignment:
| Q |
17 |
aaaactcacattagttgatggttttataatcagcactttcactgatttggagccagatgttataagggttcttcaagaaaaagagaaaccttgtgtttat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
905657 |
aaaactcacattagttgatggttttataatcagcactttcactgatttggagccagatgttataagggttcttcaagaaaaagagaaaccttgtgtttat |
905756 |
T |
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| Q |
117 |
ccagtgggacccattattagaaatgagtctaattgtgaagataacattaattcaatgtgtttaaggtggttggagaatcaacctccaaattctgttcttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
905757 |
ccagtgggacccattattagaaatgagtctaattgtgaagataacattaattcaatgtgtttaaggtggttggagaatcaacctccaaattctgttcttt |
905856 |
T |
|
| Q |
217 |
atgtatgttttgggagtggtggaacagtttctcatgaacaactgaatgagttagcatttggattagaattgagtggtaaaa |
297 |
Q |
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| T |
905857 |
atgtatgttttgggagtggtggaacagtttctcatgaacaactgaatgagttagcatttggattagaattgagtggtaaaa |
905937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 25 - 295
Target Start/End: Complemental strand, 894978 - 894708
Alignment:
| Q |
25 |
cattagttgatggttttataatcagcactttcactgatttggagccagatgttataagggttcttcaagaaaaagagaaaccttgtgtttatccagtggg |
124 |
Q |
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| T |
894978 |
cattagttgatggtgttatcataaacactttcaatgatttggaacctgaggtcataaggcttcttcaagaaaaagagaaaccttgtttttatccagtggg |
894879 |
T |
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| Q |
125 |
acccattattagaaatgagtctaattgtgaagataacattaattcaatgtgtttaaggtggttggagaatcaacctccaaattctgttctttatgtatgt |
224 |
Q |
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| T |
894878 |
acccctccacagaaatgagtctaattgtgaagataacattaattcaatgtgtttaaggtggttggagaatcaaccaccaagttctgttctttatgtatgt |
894779 |
T |
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| Q |
225 |
tttgggagtggtggaacagtttctcatgaacaactgaatgagttagcatttggattagaattgagtggtaa |
295 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
894778 |
tttgggagtggtggaacagtttctcatgaacaactcaatgagttagcatttggactagaattgagtggtaa |
894708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 290
Target Start/End: Complemental strand, 564075 - 563986
Alignment:
| Q |
201 |
ccaaattctgttctttatgtatgttttgggagtggtggaacagtttctcatgaacaactgaatgagttagcatttggattagaattgagt |
290 |
Q |
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| T |
564075 |
ccaaattctgtggtttttgtttcatttggtagtggtggaacaatttctcaaaaccaaatgaatgagttagcattagggttagaattgagt |
563986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 51 - 293
Target Start/End: Complemental strand, 8294901 - 8294662
Alignment:
| Q |
51 |
actttcactgatttggagccagatgttataagggttcttcaagaaaaagagaaaccttgtgtttatccagtgggacccattattagaaatgagtctaatt |
150 |
Q |
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||||||||||||||||| || || || ||||||||||||||||| | |||||||||| |||||||||| || ||||| || ||||| |||||||| ||| |
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| T |
8294901 |
actttcactgatttggaaccggaagtcataagggttcttcaagatagagagaaacctagtgtttatccggttggacctatgattaggaatgagtcaaata |
8294802 |
T |
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| Q |
151 |
gtgaagataacattaattcaatgtgtttaaggtggttggagaatcaacctccaaattctgttctttatgtatgttttgggagtggtggaacagtttctca |
250 |
Q |
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||||| ||||| ||||||||||||||||||||||| ||||||| |||| ||||||||||| ||| | |||||| |||||||||||| | ||||| |
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| T |
8294801 |
atgaagcaaacatg---tcaatgtgtttaaggtggttggaaaatcaacaaccaagttctgttctttttgtctcttttggaagtggtggaacactctctca |
8294705 |
T |
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| Q |
251 |
tgaacaactgaatgagttagcatttggattagaattgagtggt |
293 |
Q |
| |
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|| ||||| || |||||||| ||||| |||||||||||||| |
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| T |
8294704 |
agatcaactcaacgagttagcttttggtctagaattgagtggt |
8294662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 293
Target Start/End: Original strand, 33256882 - 33257093
Alignment:
| Q |
79 |
taagggttcttcaagaaaaagagaaaccttgtgtttatccagtgggacccattattagaaatgagtctaattgtgaagataacattaattcaatgtgttt |
178 |
Q |
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||||||| |||||||| | |||||||||| |||||| ||| || ||||| || |||||||||||||| ||| ||||| ||||| ||| ||||||| |
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| T |
33256882 |
taagggtacttcaagacagagagaaacctagtgtttttccggttggacctatcattagaaatgagtcaaataatgaagcaaacatg---tcagtgtgttt |
33256978 |
T |
|
| Q |
179 |
aaggtggttggagaatcaacctccaaattctgttctttatgtatgttttgggagtggtggaacagtttctcatgaacaactgaatgagttagcatttgga |
278 |
Q |
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|||||||||||| ||||| || |||| ||||||| ||| ||| | ||||| |||||||||||| | ||||| || ||||| ||||||||||| ||||| |
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| T |
33256979 |
aaggtggttggaaaatcagccaccaagttctgttatttttgtctcctttggaagtggtggaacactctctcaagatcaactcaatgagttagcttttggt |
33257078 |
T |
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| Q |
279 |
ttagaattgagtggt |
293 |
Q |
| |
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|||||||||||||| |
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| T |
33257079 |
ctagaattgagtggt |
33257093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 293
Target Start/End: Original strand, 1000 - 1211
Alignment:
| Q |
79 |
taagggttcttcaagaaaaagagaaaccttgtgtttatccagtgggacccattattagaaatgagtctaattgtgaagataacattaattcaatgtgttt |
178 |
Q |
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||||||| |||||||| | |||||||||| |||||| ||| || ||||| || |||||||||||||| ||| ||||| ||||| ||| ||||||| |
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| T |
1000 |
taagggtacttcaagacagagagaaacctagtgtttttccggttggacctatcattagaaatgagtcaaataatgaagcaaacatg---tcagtgtgttt |
1096 |
T |
|
| Q |
179 |
aaggtggttggagaatcaacctccaaattctgttctttatgtatgttttgggagtggtggaacagtttctcatgaacaactgaatgagttagcatttgga |
278 |
Q |
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|||||||||||| ||||| || |||| ||||||| ||| ||| | ||||| |||||||||||| | ||||| || ||||| ||||||||||| ||||| |
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| T |
1097 |
aaggtggttggaaaatcagccaccaagttctgttatttttgtctcctttggaagtggtggaacactctctcaagatcaactcaatgagttagcttttggt |
1196 |
T |
|
| Q |
279 |
ttagaattgagtggt |
293 |
Q |
| |
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|||||||||||||| |
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| T |
1197 |
ctagaattgagtggt |
1211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 16490675 - 16490748
Alignment:
| Q |
224 |
ttttgggagtggtggaacagtttctcatgaacaactgaatgagttagcatttggattagaattgagtggtaaaa |
297 |
Q |
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|||||| |||||||||||| |||| || || ||| ||||||||||||| | ||| ||||||||||||||||||| |
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| T |
16490675 |
ttttggaagtggtggaacactttcacaagagcaagtgaatgagttagcttatgggttagaattgagtggtaaaa |
16490748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 293
Target Start/End: Complemental strand, 11933 - 11865
Alignment:
| Q |
225 |
tttgggagtggtggaacagtttctcatgaacaactgaatgagttagcatttggattagaattgagtggt |
293 |
Q |
| |
|
||||| |||||||||||| ||||||| |||||| | ||||||||||| ||||| || ||||| |||||| |
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| T |
11933 |
tttggaagtggtggaacactttctcaagaacaagttaatgagttagcttttgggttggaattaagtggt |
11865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 60911 - 60979
Alignment:
| Q |
225 |
tttgggagtggtggaacagtttctcatgaacaactgaatgagttagcatttggattagaattgagtggt |
293 |
Q |
| |
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||||| |||||||||||| ||||||| |||||| | ||||||||||| ||||| || ||||| |||||| |
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| T |
60911 |
tttggaagtggtggaacactttctcaagaacaagttaatgagttagcttttgggttggaattaagtggt |
60979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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