View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_low_42 (Length: 324)
Name: NF15960_low_42
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 41544675 - 41544986
Alignment:
| Q |
1 |
tgaaattaagaactattggaattctcatttgtgcaaaaaagccagtcacatagaggaaaaaccagaaa-cttccactgcacaagaaactacagcccaaga |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
41544675 |
tgaaattaagaactattggaattctcatttgtgcaaaaaagccagtcacatagaggaaaaaccagaaaacttccactgcacaagaaactatagcccaaga |
41544774 |
T |
|
| Q |
100 |
caatgttgttggggataatgctatgttagagaataaagattcaattagtggaagtcttgattcagatgttatctttaatgtgaatgaattcttagacttt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41544775 |
caatgttgttggggataatgctatgttagagaataaagattcaattagtggaagtcttgattcagatgttatctttaatgtgaatgaattcttagacttt |
41544874 |
T |
|
| Q |
200 |
cccactgaagaaccatatgtgtttgattgggtgaataaattcttggaaattgaaacaaacaactgattgagtattgttgtagatgagtagctccagtcca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41544875 |
cccactgaagaaccatatgtgtttgattgggtgaataaattcttggaaattgaaacaaacaactgattgagtattgttgtagatgagtagctccagtcca |
41544974 |
T |
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| Q |
300 |
gtgaagtataat |
311 |
Q |
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|||||||||||| |
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| T |
41544975 |
gtgaagtataat |
41544986 |
T |
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