View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_low_45 (Length: 301)
Name: NF15960_low_45
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 43206844 - 43207110
Alignment:
| Q |
1 |
aatgagtattcattcatttctctcaattcataatacaattttttaactgataaatatagcttattaaagtattaacaaatgaaactataagtaattaact |
100 |
Q |
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| T |
43206844 |
aatgagtattcattcatttctctcaattcataatacaattttttaactcataagtatagcttattaaagtattaacaaatgaaactataagtaattaact |
43206943 |
T |
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| Q |
101 |
tgcatgcaccgttcattctaaataaactaactaaaactaaagagcagtgcagtaaaaaatctgaaaactatgttatgggtttgggttttttcattttctg |
200 |
Q |
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| T |
43206944 |
tgcatgcaccgttcattctaaataaactaactaaaactaaagagcagtgcagtaaaaaatctgaaaactatgttatgggtttgggttttttcattttctg |
43207043 |
T |
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| Q |
201 |
ccatatttgaagcaccacatgatcttgcaattacagatttgagatttagtgttcttttaaattagga |
267 |
Q |
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| T |
43207044 |
ccatatttgaagcaccacatgatcttgcaattacagatttgagatttagtgttcttttaaattagga |
43207110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 264
Target Start/End: Original strand, 43186277 - 43186484
Alignment:
| Q |
57 |
tagcttattaaagtattaacaaatgaaactataagtaattaacttgcatgcac----cgttcattctaaataaactaactaaaactaaagagcagtgcag |
152 |
Q |
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| T |
43186277 |
tagcttattaaattatgaacaaaacaaactataaacaattaacttgcatttacgattcattcattctgaacaaa-taactaaaactaaagaacagtgcag |
43186375 |
T |
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| Q |
153 |
taaaaaatctgaaaactatgttatgggtttgggttttttcattttctgccatatttgaagcaccacatgatcttgcaattacagatttgagatttagtgt |
252 |
Q |
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| T |
43186376 |
tcaaaaatctgaaaactatgtt---gtttatgggtttttcattttttgccatgtttgaggcaccacaggtttgtgaaattacagatttagaatttattgt |
43186472 |
T |
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| Q |
253 |
tcttttaaatta |
264 |
Q |
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|||| ||||||| |
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| T |
43186473 |
tcttataaatta |
43186484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 18835531 - 18835497
Alignment:
| Q |
1 |
aatgagtattcattcatttctctcaattcataata |
35 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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| T |
18835531 |
aatgagtattcattcacttctctcaattcataata |
18835497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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