View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15960_low_5 (Length: 571)
Name: NF15960_low_5
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_5 |
 | |
|
| [»] scaffold0653 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 20 - 505
Target Start/End: Original strand, 31454201 - 31454689
Alignment:
| Q |
20 |
gtgggtaggatccacagacagctgaagcaaagagtccaagctaatggacgtgtcggagcaacagctgcagtgtatttggcatccattctggagtatctga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31454201 |
gtgggtaggatccacagacagctgaagcaaagagtccaagctaatggacgtgtcggagcaacagctgcagtgtatttggcatccattctggagtatctga |
31454300 |
T |
|
| Q |
120 |
ctgctgaagttctggagctggctggaaatgctagcaaagatttgaaggtgaagaggatcacaccaaggcatttgcagcttgctatcaggggagacgaaga |
219 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || |
|
|
| T |
31454301 |
ctgctgaagttcttgagctggctggaaatgctagcaaagatttgaaggtgaagaggatcacaccaaggcatttgcagcttgccatcaggggagatgagga |
31454400 |
T |
|
| Q |
220 |
acttgatacccttatcaagggaacaattgctggtggtggtgtcattcctcacatccacaagtccttgatcaacaaaactgccaaagaatgagttctttgc |
319 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31454401 |
gcttgatacccttatcaagggaacaatagctggtggtggtgtcattcctcacatccacaagtccttgatcaacaaaactgccaaagaatgatttctttgc |
31454500 |
T |
|
| Q |
320 |
gtttgttgtcatgtggtggttctgtttattttaattaggggtg---tttttaattatgacttgaattgactttaaatcatggtgatcacattagggtagt |
416 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||| ||| ||||| ||||||||||||||| |||| ||||||||||||||| | ||||||||| |
|
|
| T |
31454501 |
ttttgttgtcatgtggcggtgctgtttattttaattaggagtgtgtttttttattatgacttgaattaacttgaaatcatggtgatcaaagtagggtagt |
31454600 |
T |
|
| Q |
417 |
tttagaattttgaatgaattgatatggtagtgtgtaaatggtggtattcttatgtggtcctttggttggtttaatttgtatgtcttaga |
505 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31454601 |
tttagaattttgaatgaattggtattgtagtgtgtaaatggtgctattcttatgtggtcctttggttggtttaatttgtctgtcttaga |
31454689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 20 - 527
Target Start/End: Original strand, 51448947 - 51449459
Alignment:
| Q |
20 |
gtgggtaggatccacagacagctgaagcaaagagtccaagctaatggacgtgtcggagcaacagctgcagtgtatttggcatccattctggagtatctga |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
51448947 |
gtgggtaggatccacagacagctgaagcacagagtccaagctaatggacgtgtgggagcaacagctgcagtgtatctggcatcaattctggagtatctga |
51449046 |
T |
|
| Q |
120 |
ctgctgaagttctggagctggctggaaatgctagcaaagatttgaaggtgaagaggatcacaccaaggcatttgcagcttgctatcaggggagacgaaga |
219 |
Q |
| |
|
|| | ||||| || || |||||||||||||| || | ||||||||| |||||||||||||||||||| |||||||| || ||||| |||||||| || || |
|
|
| T |
51449047 |
ctacagaagtacttgaactggctggaaatgcaagtagagatttgaatgtgaagaggatcacaccaagacatttgcaactggctattaggggagatgagga |
51449146 |
T |
|
| Q |
220 |
acttgatacccttatcaagggaacaattgctggtggtggtgtcattcctcacatccacaagtccttgatcaacaaaactgccaaagaatgagttctttgc |
319 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
51449147 |
acttgatacccttatcaagggaacgattgctggtggtggtgtcattcctaacattcacaagtccttgatcaataaaactgccaaagaatgagttc-ttgc |
51449245 |
T |
|
| Q |
320 |
gtttgttgtcatgtggtggttctgtttattttaattaggg--gtgtttttaattatgacttgaattgactttaaatcatggtgatcacattagggtagtt |
417 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| ||| |||||||| |||||||||| |
|
|
| T |
51449246 |
ttttgttgtcatgtggtggtgctgtttattttaattaggggtgtgtttttaatcatgacttgaattgacttaaaatgatgatgatcacagtagggtagtt |
51449345 |
T |
|
| Q |
418 |
ttagaattttgaatga----attgatatggtagtgtgtaaatggtggtattcttatgtggtcctttggttggtttaatttgtatgtcttagatatttgtg |
513 |
Q |
| |
|
||| |||||||||| | ||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
51449346 |
ttacaattttgaatcaattgattgatatggtggtgtgtaaatggtggtattcttatgtcgtcctttggatggtttaatttgtccgtcttagatatttgtg |
51449445 |
T |
|
| Q |
514 |
atgctgttggagtt |
527 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
51449446 |
atgttgttggagtt |
51449459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 107 - 282
Target Start/End: Complemental strand, 2216105 - 2215930
Alignment:
| Q |
107 |
ctggagtatctgactgctgaagttctggagctggctggaaatgctagcaaagatttgaaggtgaagaggatcacaccaaggcatttgcagcttgctatca |
206 |
Q |
| |
|
||||||||| | ||||| || || ||||| ||||||| ||||| ||||| ||| ||||||||||| | || ||||| || ||| | || ||||||||| |
|
|
| T |
2216105 |
ctggagtatttaactgcagaggtgttggagttggctggcaatgcaagcaaggatctgaaggtgaagcgtattacacctagacatctacaacttgctatcc |
2216006 |
T |
|
| Q |
207 |
ggggagacgaagaacttgatacccttatcaagggaacaattgctggtggtggtgtcattcctcacatccacaagtc |
282 |
Q |
| |
|
| ||||||||||||||||| || || ||||| |||||||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
2216005 |
gtggagacgaagaacttgacactctcatcaaaggaacaatagctggtggtggtgttattcctcatatccacaagtc |
2215930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 107 - 282
Target Start/End: Complemental strand, 2224215 - 2224040
Alignment:
| Q |
107 |
ctggagtatctgactgctgaagttctggagctggctggaaatgctagcaaagatttgaaggtgaagaggatcacaccaaggcatttgcagcttgctatca |
206 |
Q |
| |
|
||||||||| | ||||| || || ||||| ||||||| ||||| ||||| ||| ||||||||||| | || ||||| || ||| | || ||||||||| |
|
|
| T |
2224215 |
ctggagtatttaactgcagaggtgttggagttggctggcaatgcaagcaaggatctgaaggtgaagcgtattacaccgagacatctacaacttgctatcc |
2224116 |
T |
|
| Q |
207 |
ggggagacgaagaacttgatacccttatcaagggaacaattgctggtggtggtgtcattcctcacatccacaagtc |
282 |
Q |
| |
|
| ||||||||||||||||| || || ||||| |||||||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
2224115 |
gtggagacgaagaacttgacactctcatcaaaggaacaatagctggtggtggtgttattcctcatatccacaagtc |
2224040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 474
Target Start/End: Complemental strand, 9279971 - 9279526
Alignment:
| Q |
20 |
gtgggtaggatccacagacagctgaagcaaagagtccaagctaatggacgtgtcggagcaacagctgcagtgtatttggcatccattctggagtatctga |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||| ||| ||||||| ||||||| | ||||||| ||| ||||||| ||||| |||||||||| |
|
|
| T |
9279971 |
gtgggtaggatccacaaacagctgaagcaaagggtccaatataacagacgtgtgggagcaataactgcagtttatctggcatcaattctagagtatctga |
9279872 |
T |
|
| Q |
120 |
ctgctgaagttctggagctggctggaaatgctagcaaagatttgaaggtgaagaggatcacaccaaggcatttgcagcttgctatcaggggagacgaaga |
219 |
Q |
| |
|
|||| |||||||| || |||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||| || || |
|
|
| T |
9279871 |
ctgcggaagttcttgaactggctggaaatgcaggttaagatttgaaggtgaagaggatcacaccaaagcatttgcagctggctattaggggagatgagga |
9279772 |
T |
|
| Q |
220 |
acttgatacccttatcaagggaacaattgctggtggtggtgtcattcctcacatccacaagtccttgatcaacaaaactgccaaagaatgagttctttgc |
319 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||| || |||| ||||||||||||||||||||||||||||||||| |||| |||| | |
|
|
| T |
9279771 |
ac-------ccttatcaagggaacaattgttggtggtggtgtcatttctaacattcacaagtccttgatcaacaaaactgccaaagaacgagt-ctttac |
9279680 |
T |
|
| Q |
320 |
gtttgttgtcatgtggtggttctgtttattttaattaggggtgt--ttttaattatgacttgaattgactttaaatcatggtgatcacattagggtagtt |
417 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||| |||| || ||||||||| |||||||||| |
|
|
| T |
9279679 |
ttttgttgtcatgtggtg---ctgtttattttaattaggggtgtgttttttattatgacttggattgacttgaaatgatagtgatcacagtagggtagtt |
9279583 |
T |
|
| Q |
418 |
ttagaattttgaatgaattgatatggtagtgtgtaaatggtggtattcttatgtggt |
474 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9279582 |
ttagaattttgaatgaatttatatggtagtgtgtaaatggtgaaattcttatgtggt |
9279526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 32 - 334
Target Start/End: Complemental strand, 9247506 - 9247203
Alignment:
| Q |
32 |
cacagacagctgaagcaaagagtccaagctaatggacgtgtcggagcaacagctgcagtgtatttggcatccattctggagtatctgactgctgaagttc |
131 |
Q |
| |
|
|||||||||| |||||| ||| ||||| |||| | | ||| |||||||| ||||||| ||| ||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
9247506 |
cacagacagcagaagcatagactccaaactaacgcatatgtgggagcaacgactgcagtttatccggcataaattctagagtatctgactgcggaagttc |
9247407 |
T |
|
| Q |
132 |
tggagctggctggaaatgctagcaaagatttgaaggtgaagaggatcacaccaaggcatttgcagcttgctatcaggggagacgaagaacttgataccct |
231 |
Q |
| |
|
| || |||||||||||| | | ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| || |||||||||||||| |
|
|
| T |
9247406 |
ttgaactggctggaaattcaaataaagatttgaaggtgaagaggatcacaccaaggcagttgcagctggctattaggggagatgaggaacttgataccct |
9247307 |
T |
|
| Q |
232 |
tatcaaggg-aacaattgctggtggtggtgtcattcctcacatccacaagtccttgatcaacaaaactgccaaagaatgagttctttgcgtttgttgtca |
330 |
Q |
| |
|
||||||||| || || |||||||||| || ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9247306 |
tatcaagggaaaaaaatgctggtggttgtatcattccacacatccacaagtcctttatcaacaaaactgccaaagaatgagttctttgcttttgttgtca |
9247207 |
T |
|
| Q |
331 |
tgtg |
334 |
Q |
| |
|
|||| |
|
|
| T |
9247206 |
tgtg |
9247203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 9290942 - 9290657
Alignment:
| Q |
20 |
gtgggtaggatccacagacagctgaagcaaagagtccaagctaatggacgtgtcggagcaacagctgcagtgtatttggcatccattctggagtatctga |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||| ||| ||||||| ||||||| | ||||||| ||| ||||||| ||||| |||||||||| |
|
|
| T |
9290942 |
gtgggtaggatccacaaacagctgaagcaaagggtccaatataacagacgtgtgggagcaataactgcagtttatctggcatcaattctagagtatctga |
9290843 |
T |
|
| Q |
120 |
ctgctgaagttctggagctggctggaaatgctagcaaagatttgaaggtgaagaggatcacaccaaggcatttgcagcttgctatcaggggagacgaaga |
219 |
Q |
| |
|
|||| |||||||| || |||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||| || || |
|
|
| T |
9290842 |
ctgcggaagttcttgaactggctggaaatgcaggttaagatttgaaggtgaagaggatcacaccaaagcatttgcagctggctattaggggagatgagga |
9290743 |
T |
|
| Q |
220 |
acttgatacccttatcaagggaacaattgctggtggtggtgtcattcctcacatccacaagtccttgatcaacaaaactgccaaagaatgagt |
312 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| || |||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9290742 |
-------acccttatcaagggaacaattgttggtggtggtgtcatttctaacattcacaagtccttgatcaacaaaactgccaaagaacgagt |
9290657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 188 - 456
Target Start/End: Original strand, 9279215 - 9279478
Alignment:
| Q |
188 |
catttgcagcttgctatcaggggagacgaagaacttgatacccttatcaagggaacaattgctggtggtggtgtcattcctcacatccacaagtccttga |
287 |
Q |
| |
|
||||||||||| ||||| |||||||| || ||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
9279215 |
catttgcagctcgctattaggggagatgaggaatttgatacccttatcaagggaacaattcctggtggttgtgtcattcctcacattgacaagtccttga |
9279314 |
T |
|
| Q |
288 |
tcaacaaaactgccaaagaatgagttctttgcgtttgttgtcatgtggtggttctgtttattttaattagggg---tgtttttaattatgacttgaattg |
384 |
Q |
| |
|
||||| |||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| | ||||||| |||||||||||||||| |
|
|
| T |
9279315 |
tcaac-aaactgccaaagaatgag---tttgcttttgttgtcatttggtg---atgtttattttaattaggaggtatgttttttattatgacttgaattg |
9279407 |
T |
|
| Q |
385 |
actttaaatcatggtgatcacattagggtagttttagaattttgaatgaattgatatggtagtgtgtaaatg |
456 |
Q |
| |
|
| || |||| ||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
9279408 |
atttgaaataatggtgatcaccgtagggtagttttataattttgaa-gaatttatatggtagtgtgtaaatg |
9279478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 381
Target Start/End: Original strand, 17200173 - 17200533
Alignment:
| Q |
20 |
gtgggtaggatccacagacagctgaagcaaagagtccaagctaatggacgtgtcggagcaacagctgcagtgtatttggcatccattctggagtatctga |
119 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||| |||||||||||||| ||||||||||||| ||| ||| ||||||| ||||| |||||||||| |
|
|
| T |
17200173 |
gtgggtaggatccacaaatagctgaagcaaagagtccatgctaatggacgtgtgggagcaacagctgtagtttatctggcatcaattctagagtatctga |
17200272 |
T |
|
| Q |
120 |
ctgctgaagttctggagctggctggaaatgctagcaaagatttgaaggtgaagaggatcacaccaaggcatttgcagcttgctatcaggggagacgaaga |
219 |
Q |
| |
|
|| | |||||| | || | ||||| |||||| | ||| ||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| || || |
|
|
| T |
17200273 |
ctacagaagttttagaaccggctgaaaatgcaaccaatgatttgaagttgaagaggatcacaccaaggcatttgcagctggctattaggggagatgagga |
17200372 |
T |
|
| Q |
220 |
acttgatacccttatcaagggaacaattgctggtggtggtgtcattcctcacatccacaagtccttgatcaacaaaactgccaaagaatgagttctttgc |
319 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17200373 |
acttgatacccttgtcaagggaacaattgctggtggtggtgtcattcctaacattcacaagtccttgatcaacaaaactatcaaagaatgagttctttgc |
17200472 |
T |
|
| Q |
320 |
gtttgttgtcatgtggtggttctgtttattttaattaggg--gtgtttttaattatgacttgaa |
381 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
17200473 |
ttttgttgtcatgtggtg---ttgtttattttaattaggggtgtgttttttattatgacttgaa |
17200533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 74 - 334
Target Start/End: Original strand, 6424 - 6685
Alignment:
| Q |
74 |
ggagcaacagctgcagtgtatttggcatccattctggagtatctgactgctgaagttctggagctggctggaaatgctagcaaagatttgaaggtgaaga |
173 |
Q |
| |
|
|||||||| ||||||| ||| ||||| ||||| |||||||||||||| |||||||| || |||||||||||| | | ||||||||||||||||||| |
|
|
| T |
6424 |
ggagcaacgactgcagtttatccggcataaattctagagtatctgactgcggaagttcttgaactggctggaaattcaaataaagatttgaaggtgaaga |
6523 |
T |
|
| Q |
174 |
ggatcacaccaaggcatttgcagcttgctatcaggggagacgaagaacttgatacccttatcaaggg-aacaattgctggtggtggtgtcattcctcaca |
272 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| |||||||| || ||||||||||||||||||||||| || || |||||||||| || ||||||| |||| |
|
|
| T |
6524 |
ggatcacaccaaggcagttgcagctggctattaggggagatgaggaacttgatacccttatcaagggaaaaaaatgctggtggttgtatcattccacaca |
6623 |
T |
|
| Q |
273 |
tccacaagtccttgatcaacaaaactgccaaagaatgagttctttgcgtttgttgtcatgtg |
334 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6624 |
tccacaagtcctttatcaacaaaactgccaaagaatgagttctttgcttttgttgtcatgtg |
6685 |
T |
|
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