View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_low_52 (Length: 286)
Name: NF15960_low_52
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 270
Target Start/End: Complemental strand, 10918917 - 10918667
Alignment:
| Q |
21 |
tcaggaccgtaatattttctttccttttgttttcatctctaaatcgtgcattctaaaaagatcaatcatctttgtcgatggatttttccagaaacatcat |
120 |
Q |
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| T |
10918917 |
tcaggaccgtaatattttctttccttttgttttcatccctaaatcgtgcattctaagaaggtcaatcgtctttgtcgatgggtttttccagaaacattat |
10918818 |
T |
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| Q |
121 |
ggttgcagtgagtaaaatacatggatttaaaaaatatc-nnnnnnnnnnnnnnnnnnnnngattgattctaaaaacgtaactgtcaaaacctagatctca |
219 |
Q |
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| T |
10918817 |
ggctgccgtgagtaaaatacatggatttaaaaaatatcttttttttgttttcttctttttgattgattttaaaaatgtaactgtcaaaacctagatctca |
10918718 |
T |
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| Q |
220 |
gtttgaggtggaggttggctcaagatgttgaaacattataatttatttgat |
270 |
Q |
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| T |
10918717 |
gtttgaggtggaggttggctcaagatgttgaaacattataatttatttgat |
10918667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 43958664 - 43958553
Alignment:
| Q |
21 |
tcaggaccgtaatattttctttccttttgttttcatctctaaatcgtgcattctaaaaagatcaatcatctttgtcgatggatttttccagaaacatcat |
120 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| |||||| ||||||||||||| |||||||||||||||||| |
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| T |
43958664 |
tcaggaccgtaatattttctttccttttgttttcatccctaaatcgtgaattctaagaaggtcaatcgtctttgtcgatgggtttttccagaaacatcat |
43958565 |
T |
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| Q |
121 |
ggttgcagtgag |
132 |
Q |
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| T |
43958564 |
ggctgcagtgag |
43958553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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