View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_low_54 (Length: 281)
Name: NF15960_low_54
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 45401058 - 45400805
Alignment:
| Q |
18 |
atatctggcaccttttgtattccgttgcttcccatacctagtgcatcttgtgcggatattgtttaataaattttgttgattcgatnnnnnnngttgctaa |
117 |
Q |
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| T |
45401058 |
atatctggcaccttttgtattccgttgcttcccatacctagtgcatcttgtgcgggtattgcttaataaattttgttgattaaa-aaaaaaagttgctaa |
45400960 |
T |
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| Q |
118 |
cctcttttttagtgagtgtcattgatgccatcaagtgaaaaccaatgttatgttacaatataagaaaagggatataaaaatcaaattaagagcgtttaac |
217 |
Q |
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| T |
45400959 |
cctcttttttagtgagtgtcattgatgccatcaagtgaaaaccaatgttatgttacaatataagaaaagggatataaaaatcaaattaagagcgtttaac |
45400860 |
T |
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| Q |
218 |
aaagatataaaaacacaatatttacggaagcaagtcttgcacattgagcctttgc |
272 |
Q |
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| T |
45400859 |
aaagatataaaaacacaatatttacggaagcaagtcttgcacattgagcctttgc |
45400805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 46070860 - 46070910
Alignment:
| Q |
18 |
atatctggcaccttttgtattccgttgcttcccatacctagtgcatcttgt |
68 |
Q |
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| T |
46070860 |
atatccggcacctattgtattctgttgctttgcatacctagtgcatcttgt |
46070910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 46070930 - 46070979
Alignment:
| Q |
50 |
catacctagtgcatcttgtgcggatattgtttaataaattttgttgattc |
99 |
Q |
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| T |
46070930 |
catacctagtgcatcttgtgcgggtagtgcctaataaattttgctgattc |
46070979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 46501873 - 46501833
Alignment:
| Q |
162 |
atgttatgttacaatataagaaaagggatataaaaatcaaa |
202 |
Q |
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| T |
46501873 |
atgttatgttacaatagaagaaaagggaaataaatatcaaa |
46501833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 46501957 - 46501925
Alignment:
| Q |
111 |
ttgctaacctcttttttagtgagtgtcattgat |
143 |
Q |
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| T |
46501957 |
ttgctaacctcttttttagtgagtgccattgat |
46501925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 8721370 - 8721410
Alignment:
| Q |
52 |
tacctagtgcatcttgtgcggatattgtttaataaattttg |
92 |
Q |
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| T |
8721370 |
tacctagtgcgtcttgtgcgggtattgcttaataaattttg |
8721410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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