View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15960_low_57 (Length: 259)

Name: NF15960_low_57
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15960_low_57
NF15960_low_57
[»] chr7 (13 HSPs)
chr7 (13-249)||(4635678-4635914)
chr7 (13-247)||(4642525-4642759)
chr7 (13-247)||(4671461-4671695)
chr7 (13-247)||(4660622-4660859)
chr7 (13-247)||(4665756-4665990)
chr7 (36-247)||(4629753-4629964)
chr7 (13-244)||(4652341-4652572)
chr7 (79-148)||(4713226-4713295)
chr7 (60-249)||(4784894-4785083)
chr7 (13-249)||(4698249-4698485)
chr7 (60-249)||(4817323-4817512)
chr7 (75-157)||(4862772-4862854)
chr7 (27-97)||(4676860-4676930)
[»] chr4 (1 HSPs)
chr4 (13-247)||(18926800-18927034)


Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 4635678 - 4635914
Alignment:
Q  13 caccttcttcgtagcatcttttgaaccaacaaactagactagctgtattcttatccaaatcgcgaaccaaaggtggcctagcacacaacacctcaagaag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4635678 caccttcttcgtagcatcttttgaaccaacaaactagactagctgtattcttatccaaatcgcgaaccaaaggtggcctagcacacaacacctcaagaag 4635777  T
Q  113 caccacaccgaatgagtacacgtcagatttaagagtaagcctttggaacatatagtactcaggatctaaataccccaagcttcccttaacaattgtgctg 212  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4635778 caccacaccgaatgagtacacgtctgatttaagagtaagcctttggaacatatagtactcaggatctaaataccccaagcttcccttaacaattgtgctg 4635877  T
Q  213 acgtgggtagtcgatatacctgtcggtcccacctttg 249  Q
    |||||||||||||||||||||||||||||||||||||    
T  4635878 acgtgggtagtcgatatacctgtcggtcccacctttg 4635914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 4642525 - 4642759
Alignment:
Q  13 caccttcttcgtagcatcttttgaaccaacaaactagactagctgtattcttatccaaatcgcgaaccaaaggtggcctagcacacaacacctcaagaag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||    
T  4642525 caccttcttcgtagcatcttttgaaccaacaaactagactagcagtattcttatccaaattacgaaccaaaggtggcctagcacacaacacttcaagaag 4642624  T
Q  113 caccacaccgaatgagtacacgtcagatttaagagtaagcctttggaacatatagtactcaggatctaaataccccaagcttcccttaacaattgtgctg 212  Q
     ||||||||||| |||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||| | |||||| || || |||||||||    
T  4642625 taccacaccgaacgagtacacatctgattttagagttagcctttggaacatatagtactcaggatctaaatacccaaggcttcctttcaccattgtgctg 4642724  T
Q  213 acgtgggtagtcgatatacctgtcggtcccacctt 247  Q
    | ||||||||||||||| ||||| |||||||||||    
T  4642725 atgtgggtagtcgatatccctgtaggtcccacctt 4642759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 4671461 - 4671695
Alignment:
Q  13 caccttcttcgtagcatcttttgaaccaacaaactagactagctgtattcttatccaaatcgcgaaccaaaggtggcctagcacacaacacctcaagaag 112  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4671461 caccttcatcgtagcatcttttaaaccaacaaactagactagctgtattcttatccaaatcgcgaaccaaaggtggcctagcacacaacacttcaagaag 4671560  T
Q  113 caccacaccgaatgagtacacgtcagatttaagagtaagcctttggaacatatagtactcaggatctaaataccccaagcttcccttaacaattgtgctg 212  Q
     |||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||| | |||||| || || |||||||||    
T  4671561 taccacaccgaatgagtacacatctgattttagagttagcctttggaacatatagtactcaggatctaaatacccaaggcttcctttcaccattgtgctg 4671660  T
Q  213 acgtgggtagtcgatatacctgtcggtcccacctt 247  Q
    ||||||||||| | ||| || || |||||||||||    
T  4671661 acgtgggtagttgttatccccgtgggtcccacctt 4671695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 4660622 - 4660859
Alignment:
Q  13 caccttcttcgtagcatcttttgaaccaacaaactagactagctgtattcttatccaaatcgcgaaccaaaggtggcctagcacacaacacctcaagaag 112  Q
    ||||||| || ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4660622 caccttcatcatagcatcttttaaaccaacaaactagactagttgtattcttatccaaatcgcgaaccaatggtggcctagcacacaacacctcaagaag 4660721  T
Q  113 caccacaccgaatgagtacacgtcagatttaagagtaagcctttggaacatatagtactcaggatctaaataccccaagcttcccttaacaattgtgctg 212  Q
    |||||||||||| |||||||| |||||||| ||||| | |||||||| ||||||||| |  ||||| |||||||| | ||| ||||| || |||||||||    
T  4660722 caccacaccgaacgagtacacttcagattttagagttaacctttggagcatatagtattggggatccaaatacccaaggctccccttcaccattgtgctg 4660821  T
Q  213 acg---tgggtagtcgatatacctgtcggtcccacctt 247  Q
    |||   || ||||||||||| |||||||||||||||||    
T  4660822 acgtgatgagtagtcgatatccctgtcggtcccacctt 4660859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 4665756 - 4665990
Alignment:
Q  13 caccttcttcgtagcatcttttgaaccaacaaactagactagctgtattcttatccaaatcgcgaaccaaaggtggcctagcacacaacacctcaagaag 112  Q
    ||||||| ||||| ||| |||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  4665756 caccttcatcgtaacattttttaaaccaacaaactagactagcagtattcttatccaaatcacgaaccaaaggtggtctagcacacaacacctcaagaag 4665855  T
Q  113 caccacaccgaatgagtacacgtcagatttaagagtaagcctttggaacatatagtactcaggatctaaataccccaagcttcccttaacaattgtgctg 212  Q
    |||||||||||| |||||||| |||||||| ||||| |||||||||| |||||| || || ||||| ||||| || | ||| ||||| || || ||||||    
T  4665856 caccacaccgaacgagtacacatcagattttagagttagcctttggagcatataatattcgggatccaaatatccgaggctccccttcaccatcgtgctg 4665955  T
Q  213 acgtgggtagtcgatatacctgtcggtcccacctt 247  Q
    || |||||||| ||||| |||||||||||||||||    
T  4665956 acatgggtagttgatatccctgtcggtcccacctt 4665990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 36 - 247
Target Start/End: Original strand, 4629753 - 4629964
Alignment:
Q  36 aaccaacaaactagactagctgtattcttatccaaatcgcgaaccaaaggtggcctagcacacaacacctcaagaagcaccacaccgaatgagtacacgt 135  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||    
T  4629753 aaccaacaaactagactagctgtattcttatccaaatcacgaaccaaaggtggtctagcacacaacacctcaagaagcaccacaccaaacgagtacacgt 4629852  T
Q  136 cagatttaagagtaagcctttggaacatatagtactcaggatctaaataccccaagcttcccttaacaattgtgctgacgtgggtagtcgatatacctgt 235  Q
    ||||||| ||||| |||||||||| ||||||||| || ||||| ||||| || | ||| ||||| || || |||||||| |||||||||| ||| |||||    
T  4629853 cagattttagagttagcctttggagcatatagtattcgggatccaaatatccaaggctccccttcaccatcgtgctgacatgggtagtcgttattcctgt 4629952  T
Q  236 cggtcccacctt 247  Q
     |||||||||||    
T  4629953 aggtcccacctt 4629964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 4652341 - 4652572
Alignment:
Q  13 caccttcttcgtagcatcttttgaaccaacaaactagactagctgtattcttatccaaatcgcgaaccaaaggtggcctagcacacaacacctcaagaag 112  Q
    ||||||| ||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  4652341 caccttcatcgtagcattttttaaaccaacaaactagacttgctgtattcttatccaaatcacgaaccaaaggtggtctagcacacaacacctcaagaag 4652440  T
Q  113 caccacaccgaatgagtacacgtcagatttaagagtaagcctttggaacatatagtactcaggatctaaataccccaagcttcccttaacaattgtgctg 212  Q
    ||||||||||||||||||||| |||||||| ||||| |||||||||| |||||| || || ||||| |||||||| | ||| ||||| || || |||||     
T  4652441 caccacaccgaatgagtacacatcagattttagagttagcctttggagcatataatattctggatccaaataccctaggctacccttcaccatcgtgcta 4652540  T
Q  213 acgtgggtagtcgatatacctgtcggtcccac 244  Q
    || ||||| || || || | ||||||||||||    
T  4652541 acatgggttgtagacatccttgtcggtcccac 4652572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 4713295 - 4713226
Alignment:
Q  79 ccaaaggtggcctagcacacaacacctcaagaagcaccacaccgaatgagtacacgtcagatttaagagt 148  Q
    |||||||||| || ||||||||||||||||||||||| || |||||||||||||||||||| ||||||||    
T  4713295 ccaaaggtggtctcgcacacaacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagt 4713226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 249
Target Start/End: Complemental strand, 4785083 - 4784894
Alignment:
Q  60 ttcttatccaaatcgcgaaccaaaggtggcctagcacacaacacctcaagaagcaccacaccgaatgagtacacgtcagatttaagagtaagcctttgga 159  Q
    ||||||||||||   |||||||| || || || ||||||||||||||||||||||| |||||||| |||||||| ||||| || ||||| | ||||||      
T  4785083 ttcttatccaaagaacgaaccaacgggggtctcgcacacaacacctcaagaagcacaacaccgaaagagtacacatcagactttagagtcaacctttgtc 4784984  T
Q  160 acatatagtactcaggatctaaataccccaagcttcccttaacaattgtgctgacgtgggtagtcgatatacctgtcggtcccacctttg 249  Q
     ||| ||||| || ||||| |||||||| |  || || || || || |||||||| |||||  |||| || ||||| |||||||| ||||    
T  4784983 gcatgtagtattctggatccaaatacccgagactacctttcaccatagtgctgacatgggtcatcgacatccctgtaggtcccacttttg 4784894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 4698485 - 4698249
Alignment:
Q  13 caccttcttcgtagcatcttttgaaccaacaaactagactagctgtattcttatccaaatcgcgaaccaaaggtggcctagcacacaacacctcaagaag 112  Q
    ||||||| | ||| ||||||| ||||||| | |||| ||| ||| | ||||| ||||||   |||||||||||||| || |||||||| |||||||||||    
T  4698485 caccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaagaag 4698386  T
Q  113 caccacaccgaatgagtacacgtcagatttaagagtaagcctttggaacatatagtactcaggatctaaataccccaagcttcccttaacaattgtgctg 212  Q
    ||| ||||| || ||||||||||| || || || || | ||||||    |  ||||| || |||||||||||||| |  || ||||| ||  | ||||||    
T  4698385 cacaacaccaaaagagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcaccttagtgctg 4698286  T
Q  213 acgtgggtagtcgatatacctgtcggtcccacctttg 249  Q
    ||||||||  |||| || ||||| |||||||| ||||    
T  4698285 acgtgggtcatcgacattcctgttggtcccacttttg 4698249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 249
Target Start/End: Complemental strand, 4817512 - 4817323
Alignment:
Q  60 ttcttatccaaatcgcgaaccaaaggtggcctagcacacaacacctcaagaagcaccacaccgaatgagtacacgtcagatttaagagtaagcctttgga 159  Q
    ||||||||||||   |||||||| || || || ||||||||||||||||||||||| |||||||| |||||||| ||||| || ||||| |  |||||      
T  4817512 ttcttatccaaagaccgaaccaacgggggtctcgcacacaacacctcaagaagcacaacaccgaaagagtacacatcagactttagagtcaatctttgtc 4817413  T
Q  160 acatatagtactcaggatctaaataccccaagcttcccttaacaattgtgctgacgtgggtagtcgatatacctgtcggtcccacctttg 249  Q
     ||| ||||| || ||||| |||||||| |  || || || || || |||||||| |||||  |||| || ||||| |||||||| ||||    
T  4817412 gcatgtagtattctggatccaaatacccgagactacctttcaccatagtgctgacatgggtcatcgacatccctgtaggtcccacttttg 4817323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 4862772 - 4862854
Alignment:
Q  75 cgaaccaaaggtggcctagcacacaacacctcaagaagcaccacaccgaatgagtacacgtcagatttaagagtaagcctttg 157  Q
    |||||||| ||||| || |||||||||||||||||||| || |||||||| || |||||||| ||||| ||||| | ||||||    
T  4862772 cgaaccaatggtggtctcgcacacaacacctcaagaaggacaacaccgaaagaatacacgtcggattttagagtcaacctttg 4862854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 4676860 - 4676930
Alignment:
Q  27 catcttttgaaccaacaaactagactagctgtattcttatccaaatcgcgaaccaaaggtggcctagcaca 97  Q
    |||||||  ||||||||||||| |||||  || ||||| || ||||||||||||||||| |||||||||||    
T  4676860 catctttgaaaccaacaaactaaactagtcgtcttcttgtctaaatcgcgaaccaaaggcggcctagcaca 4676930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 18927034 - 18926800
Alignment:
Q  13 caccttcttcgtagcatcttttgaaccaacaaactagactagctgtattcttatccaaatcgcgaaccaaaggtggcctagcacacaacacctcaagaag 112  Q
    ||||||| ||||| |||||||  |||||||||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||| |||||||||||    
T  18927034 caccttcatcgtaacatctttgaaaccaacaaactagactagccgtcttcttatctaaatcgcgaaccaaaggtggccttgcacacaatacctcaagaag 18926935  T
Q  113 caccacaccgaatgagtacacgtcagatttaagagtaagcctttggaacatatagtactcaggatctaaataccccaagcttcccttaacaattgtgctg 212  Q
    |||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||| |  || ||||| || |||||||||    
T  18926934 caccacaccgaatgagtacacgtcagattttagggtaagcctttggagcatatagtactcaggatctaaatacccaagactccccttcaccattgtgctg 18926835  T
Q  213 acgtgggtagtcgatatacctgtcggtcccacctt 247  Q
    || |||||||| ||||| || || |||||||||||    
T  18926834 acatgggtagttgatatccccgttggtcccacctt 18926800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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