View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_low_59 (Length: 253)
Name: NF15960_low_59
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_59 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 39228009 - 39227786
Alignment:
| Q |
19 |
caattgttcactccctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctatggagaaattccttcaaaatatggt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39228009 |
caattgttcactccctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctatggagaaattccttcaaaatatggt |
39227910 |
T |
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| Q |
119 |
aacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaatcttactaatcttacacaccttttgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227909 |
aacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaatcttactaatcttacacaccttttgt |
39227810 |
T |
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| Q |
219 |
taggttattacaatgagtttgatg |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
39227809 |
taggttattacaatgagtttgatg |
39227786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 25547208 - 25546985
Alignment:
| Q |
19 |
caattgttcactccctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctatggagaaattccttcaaaatatggt |
118 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25547208 |
caattgttcactacctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctatggagaaattccttcaaaatatggt |
25547109 |
T |
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| Q |
119 |
aacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaatcttactaatcttacacaccttttgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25547108 |
aacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaatcttactaatcttacacaccttttgt |
25547009 |
T |
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| Q |
219 |
taggttattacaatgagtttgatg |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
25547008 |
taggttattacaatgagtttgatg |
25546985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 16733310 - 16733375
Alignment:
| Q |
128 |
cagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaat |
193 |
Q |
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|||||||| | |||||||||||| || ||||||||||| ||||| ||||| ||||||||||||| |
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| T |
16733310 |
cagcttaattttttgtctcttgctggaaatgatttgagtggttttttacctagtgagcttggaaat |
16733375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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