View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15960_low_60 (Length: 250)

Name: NF15960_low_60
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15960_low_60
NF15960_low_60
[»] chr4 (12 HSPs)
chr4 (98-250)||(31883839-31883992)
chr4 (39-97)||(55986309-55986367)
chr4 (39-96)||(40169779-40169836)
chr4 (39-99)||(40168637-40168697)
chr4 (39-94)||(55984768-55984823)
chr4 (41-97)||(48157680-48157736)
chr4 (42-97)||(9178635-9178690)
chr4 (39-99)||(4433181-4433241)
chr4 (39-99)||(43793629-43793689)
chr4 (39-98)||(25011980-25012039)
chr4 (41-100)||(48157117-48157176)
chr4 (44-88)||(19909182-19909226)
[»] chr7 (3 HSPs)
chr7 (39-99)||(12961982-12962042)
chr7 (39-98)||(8527040-8527099)
chr7 (39-100)||(48175959-48176021)
[»] chr6 (6 HSPs)
chr6 (39-100)||(20409064-20409125)
chr6 (39-99)||(6977025-6977085)
chr6 (39-97)||(6978137-6978195)
chr6 (39-100)||(16859333-16859394)
chr6 (39-98)||(16864492-16864551)
chr6 (39-98)||(20410217-20410276)
[»] chr3 (12 HSPs)
chr3 (39-99)||(54539107-54539167)
chr3 (39-99)||(54539498-54539558)
chr3 (39-94)||(48053129-48053184)
chr3 (58-97)||(48060799-48060838)
chr3 (39-100)||(28173726-28173787)
chr3 (39-100)||(34878526-34878587)
chr3 (39-99)||(22447738-22447798)
chr3 (41-107)||(51315742-51315808)
chr3 (43-100)||(52281594-52281651)
chr3 (39-99)||(26628023-26628083)
chr3 (44-100)||(32960642-32960698)
chr3 (43-99)||(52276302-52276358)
[»] chr2 (10 HSPs)
chr2 (39-99)||(45413477-45413537)
chr2 (39-97)||(1389233-1389291)
chr2 (39-98)||(45412334-45412393)
chr2 (39-98)||(1394854-1394913)
chr2 (39-97)||(28851672-28851730)
chr2 (39-94)||(28847336-28847391)
chr2 (39-100)||(30714272-30714333)
chr2 (150-249)||(33476718-33476823)
chr2 (39-99)||(2986932-2986992)
chr2 (39-99)||(10851911-10851971)
[»] chr8 (5 HSPs)
chr8 (39-100)||(38612216-38612277)
chr8 (39-100)||(38613417-38613478)
chr8 (39-100)||(23039527-23039588)
chr8 (39-98)||(23039123-23039182)
chr8 (39-99)||(4807598-4807658)
[»] chr5 (9 HSPs)
chr5 (41-98)||(8061855-8061912)
chr5 (41-100)||(8067452-8067511)
chr5 (45-97)||(17415695-17415747)
chr5 (41-100)||(24242014-24242073)
chr5 (39-97)||(17414544-17414602)
chr5 (41-100)||(14190489-14190548)
chr5 (41-97)||(14189664-14189720)
chr5 (39-100)||(31055312-31055373)
chr5 (39-99)||(18695248-18695308)
[»] chr1 (9 HSPs)
chr1 (39-99)||(46313274-46313334)
chr1 (41-100)||(50379974-50380033)
chr1 (39-100)||(2425469-2425530)
chr1 (39-96)||(43706655-43706712)
chr1 (41-97)||(46312065-46312121)
chr1 (39-99)||(46432214-46432274)
chr1 (39-98)||(4059521-4059580)
chr1 (39-100)||(28920897-28920958)
chr1 (39-100)||(51719120-51719181)
[»] scaffold0025 (1 HSPs)
scaffold0025 (39-98)||(62064-62123)
[»] scaffold0419 (1 HSPs)
scaffold0419 (39-97)||(2961-3019)
[»] scaffold1875 (1 HSPs)
scaffold1875 (39-99)||(754-814)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 98 - 250
Target Start/End: Complemental strand, 31883992 - 31883839
Alignment:
Q  98 taacaaataaacaaaacaaaatatccatcattgggcaaactattattactaaaaaactatgctcatgaaatcaaaatcctct-tgcatccgaagaccagt 196  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31883992 taacaaacaaacaaaacaaaatatccatcattgggcaaactattattactaaaaaactatgctcatgaaatcaaaatcctctctgcatccgaagaccagt 31883893  T
Q  197 tgataaccatcactgaagcgtcatttatattaccagaaccgagctcccaaaagc 250  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  31883892 tgataaccatcactgaagcttcatttatattaccagaaccgaactcccaaaagc 31883839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 55986309 - 55986367
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcc 97  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  55986309 aatagggggtcaaaatcgcaccattgtgaaagttagggggttaaaactgcagtttagcc 55986367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 40169779 - 40169836
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagc 96  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  40169779 aatagggggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagc 40169836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 40168697 - 40168637
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagccta 99  Q
    ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||    
T  40168697 aatagggggccaaaatcgcaccattgtaaaagttagggggtcaaaactgcagtttagccta 40168637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 55984823 - 55984768
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagttta 94  Q
    |||| |||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  55984823 aataaggggtcaaaatcgcaccattgtgaaagttagggggttaaaactgcagttta 55984768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 48157680 - 48157736
Alignment:
Q  41 tagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcc 97  Q
    |||||||||||||||||||| || |||||| |||||||| |||||||||||||||||    
T  48157680 tagggggccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 48157736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 9178690 - 9178635
Alignment:
Q  42 agggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcc 97  Q
    ||||||||||||||||||| || |||||| |||| ||| |||||||||||||||||    
T  9178690 agggggccaaaatcgcacctttatgaaagttaggaggtcaaaactgcagtttagcc 9178635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 4433241 - 4433181
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagccta 99  Q
    |||| ||||||||||||||| |||| ||||| ||||||||  |||| ||||||||||||||    
T  4433241 aataaggggccaaaatcgcaacattatgaaacatagggggcgaaaagtgcagtttagccta 4433181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 43793689 - 43793629
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagccta 99  Q
    |||||||||||||||||||| |||| | ||| ||||||||  |||| ||||||||||||||    
T  43793689 aatagggggccaaaatcgcaacattttaaaacatagggggcgaaaagtgcagtttagccta 43793629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 25011980 - 25012039
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcct 98  Q
    |||||||||||||||| ||| |||| ||||| ||||||||  |||| |||||||||||||    
T  25011980 aatagggggccaaaattgcaacattatgaaacatagggggcgaaaagtgcagtttagcct 25012039  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 48157176 - 48157117
Alignment:
Q  41 tagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcctaa 100  Q
    ||||||| |||||||  ||| || |||||| |||||||| ||||||||||||||||||||    
T  48157176 tagggggtcaaaatcatacctttatgaaagttagggggtcaaaactgcagtttagcctaa 48157117  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 19909226 - 19909182
Alignment:
Q  44 ggggccaaaatcgcaccattgtgaaagatagggggttaaaactgc 88  Q
    ||||||||||||||| | ||| ||||| |||||||||||||||||    
T  19909226 ggggccaaaatcgcaactttgagaaagttagggggttaaaactgc 19909182  T

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Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 12962042 - 12961982
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagccta 99  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12962042 aatagggggccaaaatcgcaccattgtgaaagttagggggttaaaactgcagtttagccta 12961982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 8527040 - 8527099
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcct 98  Q
    |||||||||||||||||||| |||| ||||| ||||||||  |||| |||| ||||||||    
T  8527040 aatagggggccaaaatcgcaacattttgaaatatagggggcgaaaagtgcactttagcct 8527099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 48176021 - 48175959
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagataggggg-ttaaaactgcagtttagcctaa 100  Q
    |||||||||||||||||||| |||| ||||| ||||||||   |||| |||||||||||||||    
T  48176021 aatagggggccaaaatcgcaacattatgaaacatagggggcgaaaaagtgcagtttagcctaa 48175959  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 20409125 - 20409064
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcctaa 100  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  20409125 aatagggggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcctaa 20409064  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 6977085 - 6977025
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagccta 99  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  6977085 aatagggggccaaaattgcaccattgtgaaagttagggggttaaaactgcagtttagccta 6977025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 6978137 - 6978195
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcc 97  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6978137 aatagggagccaaaatcgcaccattgtgaaagttagggggttaaaactgcagtttagcc 6978195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 16859394 - 16859333
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcctaa 100  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  16859394 aatagggggtcaaaatcgcaccattgtgaaagttagggggttaaaattgcagtttagcctaa 16859333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 16864492 - 16864551
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcct 98  Q
    |||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  16864492 aataggggaccaaaatcgcaccattgtaaaagttagggggttaaaactgcagtttagcct 16864551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 20410217 - 20410276
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcct 98  Q
    ||||||||| ||||||||||||||||| |||| |||||||| ||||||||||||||||||    
T  20410217 aatagggggtcaaaatcgcaccattgtaaaagttagggggtcaaaactgcagtttagcct 20410276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 54539167 - 54539107
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagccta 99  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  54539167 aatagggggccaaaatcacaccattgtgaaagttagggggttaaaactgcagtttagccta 54539107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 54539498 - 54539558
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagccta 99  Q
    ||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||    
T  54539498 aatagggggccaaaatcgcaccattgtcaaagttaaggggttaaaactgcagtttagccta 54539558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 48053184 - 48053129
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagttta 94  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  48053184 aatagggggccaaaatcgcaccattgtgaaagttagagggttaaaactgcagttta 48053129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 48060799 - 48060838
Alignment:
Q  58 accattgtgaaagatagggggttaaaactgcagtttagcc 97  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  48060799 accattgtgaaagttagggggttaaaactgcagtttagcc 48060838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 28173787 - 28173726
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcctaa 100  Q
    |||||||||||||||||||| |||| ||||| ||||||||  |||| |||| ||||||||||    
T  28173787 aatagggggccaaaatcgcaacattatgaaacatagggggcgaaaagtgcactttagcctaa 28173726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 34878587 - 34878526
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcctaa 100  Q
    |||||||||||||||||||| |||| ||||| ||||||||  | || |||||||||||||||    
T  34878587 aatagggggccaaaatcgcaacattttgaaacatagggggcgagaagtgcagtttagcctaa 34878526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 22447798 - 22447738
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagccta 99  Q
    |||||||||||||||| ||| |||| ||||| ||||||||  |||| ||||||||||||||    
T  22447798 aatagggggccaaaattgcaacattttgaaacatagggggcgaaaagtgcagtttagccta 22447738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 51315742 - 51315808
Alignment:
Q  41 tagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcctaacaaataa 107  Q
    |||||||||||||||||| | ||| ||||| ||||||| |||||||||  || ||||||| ||||||    
T  51315742 tagggggccaaaatcgcaactttgggaaagttagggggctaaaactgctattaagcctaaaaaataa 51315808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 52281594 - 52281651
Alignment:
Q  43 gggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcctaa 100  Q
    |||||||||||||||| | || ||||||||||||||  |||| |||| ||||||||||    
T  52281594 gggggccaaaatcgcaacgttttgaaagatagggggggaaaagtgcactttagcctaa 52281651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 26628083 - 26628023
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagccta 99  Q
    |||||||||||||||| ||| |||| ||||| ||||||||  |||| || |||||||||||    
T  26628083 aatagggggccaaaattgcaacattttgaaacatagggggcgaaaagtgtagtttagccta 26628023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 32960698 - 32960642
Alignment:
Q  44 ggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcctaa 100  Q
    ||||||||||| ||| |||| ||||| ||||||||  |||| |||||||||||||||    
T  32960698 ggggccaaaattgcaacattttgaaacatagggggcgaaaaatgcagtttagcctaa 32960642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 52276358 - 52276302
Alignment:
Q  43 gggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagccta 99  Q
    |||||||||||||||| | || ||||||||||||||  |||| |||| |||||||||    
T  52276358 gggggccaaaatcgcaacgttttgaaagatagggggggaaaagtgcactttagccta 52276302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 45413477 - 45413537
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagccta 99  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  45413477 aatagggggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagccta 45413537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 1389291 - 1389233
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcc 97  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  1389291 aatagggggccaaaatcgcaccattctgaaagttagggggttaaaactgcagtttagcc 1389233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 45412393 - 45412334
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcct 98  Q
    ||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  45412393 aatagggggtcaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcct 45412334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 1394854 - 1394913
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcct 98  Q
    |||||||||| |||||||||||||| |||||| ||||||||||||||||||| |||||||    
T  1394854 aatagggggctaaaatcgcaccattctgaaagttagggggttaaaactgcagattagcct 1394913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 28851672 - 28851730
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcc 97  Q
    ||||||||| |||||||||| ||||||||||| |||||||| |||||||||||||||||    
T  28851672 aatagggggtcaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagcc 28851730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 28847391 - 28847336
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagttta 94  Q
    |||||||| ||||||| ||| ||||||||||  |||||||| ||||||||||||||    
T  28847391 aataggggaccaaaattgcaacattgtgaaaattagggggtcaaaactgcagttta 28847336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 30714333 - 30714272
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcctaa 100  Q
    |||||||||||||||||||| |||| | ||| ||||||||  |||| |||| ||||||||||    
T  30714333 aatagggggccaaaatcgcaacattttaaaacatagggggcgaaaagtgcactttagcctaa 30714272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 249
Target Start/End: Original strand, 33476718 - 33476823
Alignment:
Q  150 aaaactatgctcatgaaatcaaaatcctct-tgcatccgaagaccagttgat-----aaccatcactgaagcgtcatttatattaccagaaccgagctcc 243  Q
    |||||||||||||  ||||||||||| |||  | |||| |||||||| ||||     |||||| |||||||| ||||||||||||||||||| ||  |||    
T  33476718 aaaactatgctcaacaaatcaaaatcatctccgtatccaaagaccagctgataaacaaaccataactgaagcttcatttatattaccagaacagaattcc 33476817  T
Q  244 caaaag 249  Q
    ||||||    
T  33476818 caaaag 33476823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 2986932 - 2986992
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagccta 99  Q
    |||||||||||||||||||| |||| ||||| |||| | || |||| |||| |||||||||    
T  2986932 aatagggggccaaaatcgcaacattttgaaacatagagagtgaaaagtgcactttagccta 2986992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 10851971 - 10851911
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagccta 99  Q
    |||||||||  ||||||||| |||||  |||| |||||||| ||||||| |||||||||||    
T  10851971 aatagggggttaaaatcgcaacattgataaagttagggggtcaaaactgtagtttagccta 10851911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 38612277 - 38612216
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcctaa 100  Q
    |||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  38612277 aatagggggccaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagcctaa 38612216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 38613417 - 38613478
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcctaa 100  Q
    |||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  38613417 aatagggggccaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagcctaa 38613478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 23039527 - 23039588
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcctaa 100  Q
    |||||||| |||||||||||||||||| |||| || ||||||||||||||||||||||||||    
T  23039527 aataggggaccaaaatcgcaccattgtcaaagttaaggggttaaaactgcagtttagcctaa 23039588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 23039182 - 23039123
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcct 98  Q
    ||||||||||||||||  |||||||||||||| |||||||||||||||||| ||||||||    
T  23039182 aatagggggccaaaattacaccattgtgaaagttagggggttaaaactgcaatttagcct 23039123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 4807658 - 4807598
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagccta 99  Q
    |||||||||||||||| ||| |||| ||||| ||||| ||  |||| ||||||||||||||    
T  4807658 aatagggggccaaaattgcaacattttgaaacataggaggcgaaaagtgcagtttagccta 4807598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 8061912 - 8061855
Alignment:
Q  41 tagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcct 98  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  8061912 tagggggccaaaatcgcaccattctgaaagttagggggttaaaactgcagtttagcct 8061855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 8067452 - 8067511
Alignment:
Q  41 tagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcctaa 100  Q
    ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||    
T  8067452 tagggggccaaaatcgcaccattctgaaagttaggggggtaaaactgcagtttagcctaa 8067511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 17415695 - 17415747
Alignment:
Q  45 gggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcc 97  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  17415695 gggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcc 17415747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 24242073 - 24242014
Alignment:
Q  41 tagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcctaa 100  Q
    ||||||| |||||||||||| ||||||||| |||||||| ||||||||||||||||||||    
T  24242073 tagggggtcaaaatcgcacctttgtgaaagttagggggtcaaaactgcagtttagcctaa 24242014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 17414602 - 17414544
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcc 97  Q
    ||||||||||||||||||||||||||| |||| ||| |||| |||||||||||||||||    
T  17414602 aatagggggccaaaatcgcaccattgtaaaagttagagggtcaaaactgcagtttagcc 17414544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 14190489 - 14190548
Alignment:
Q  41 tagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcctaa 100  Q
    |||||| ||||||||||||| || |||||| |||||||| ||||||||||||||||||||    
T  14190489 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcctaa 14190548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 14189720 - 14189664
Alignment:
Q  41 tagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcc 97  Q
    |||||| ||||||||||||| || |||||| |||||||| |||||||||||||||||    
T  14189720 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 14189664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 31055373 - 31055312
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcctaa 100  Q
    |||||||||||||||| ||| |||| ||||| ||||||||  |||| |||||||||||||||    
T  31055373 aatagggggccaaaattgcaacattatgaaacatagggggcgaaaagtgcagtttagcctaa 31055312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 18695248 - 18695308
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagccta 99  Q
    ||||||||||||||||||||  ||| ||||| ||||||||  |||| |||| |||||||||    
T  18695248 aatagggggccaaaatcgcaatattttgaaacatagggggcgaaaagtgcactttagccta 18695308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 46313274 - 46313334
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagccta 99  Q
    |||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||    
T  46313274 aatagggggccaaaatcgcacctttgtgaaagttagggggtcaaaactgcagtttagccta 46313334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 50379974 - 50380033
Alignment:
Q  41 tagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcctaa 100  Q
    |||||| ||||||||||||| || |||||| |||||||| ||||||||||||||||||||    
T  50379974 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcctaa 50380033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 2425469 - 2425530
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcctaa 100  Q
    |||||||||||||||||||| |||| ||||| ||||||||  |||| |||||||||||||||    
T  2425469 aatagggggccaaaatcgcaacattatgaaacatagggggcaaaaagtgcagtttagcctaa 2425530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 43706712 - 43706655
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagc 96  Q
    |||||||||||||||||||| |||| ||||| ||||||||  |||| |||||||||||    
T  43706712 aatagggggccaaaatcgcaacattatgaaacatagggggcgaaaagtgcagtttagc 43706655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 46312121 - 46312065
Alignment:
Q  41 tagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcc 97  Q
    |||||||||||||||||| |||||  |||| |||||||| ||||||| |||||||||    
T  46312121 tagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 46312065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 46432274 - 46432214
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagccta 99  Q
    |||||||||||||||||||| |||| ||||| ||||||||  |||| |||| |||||||||    
T  46432274 aatagggggccaaaatcgcaacattatgaaacatagggggcgaaaagtgcactttagccta 46432214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 4059580 - 4059521
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcct 98  Q
    |||||||||||||||||||| |||| ||||| ||||||||  |||| |||| ||||||||    
T  4059580 aatagggggccaaaatcgcaacattttgaaacatagggggcgaaaagtgcactttagcct 4059521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 28920897 - 28920958
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcctaa 100  Q
    |||||||||||||||||||| |||| |||||  |||||||  |||| || ||||||||||||    
T  28920897 aatagggggccaaaatcgcaacattttgaaacttagggggcgaaaagtgaagtttagcctaa 28920958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 51719181 - 51719120
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcctaa 100  Q
    |||||||||||||||| ||| |||| ||||| |||| |||  |||| |||||||||||||||    
T  51719181 aatagggggccaaaattgcaacattatgaaacatagagggcgaaaagtgcagtttagcctaa 51719120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 62064 - 62123
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcct 98  Q
    |||| ||||||||||| ||| |||| ||||| ||||||||| |||| |||||||||||||    
T  62064 aatacggggccaaaattgcaacattttgaaacatagggggtgaaaaatgcagtttagcct 62123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 3019 - 2961
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagcc 97  Q
    |||||||||||||||||||| |||| ||||| ||||||||  |||| |||| |||||||    
T  3019 aatagggggccaaaatcgcaacattttgaaacatagggggcgaaaagtgcactttagcc 2961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1875 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1875
Description:

Target: scaffold1875; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 814 - 754
Alignment:
Q  39 aatagggggccaaaatcgcaccattgtgaaagatagggggttaaaactgcagtttagccta 99  Q
    |||||||||||||||||||| ||||  ||||  || ||||| |||| ||||||||||||||    
T  814 aatagggggccaaaatcgcaacatttcgaaacttaaggggtgaaaagtgcagtttagccta 754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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