View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_low_66 (Length: 238)
Name: NF15960_low_66
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 31883723 - 31883503
Alignment:
| Q |
1 |
tcagtggatggatcctgctcaaatgtgtcgttatcttcatctgtatcatcctccgagtttggaagttggtcagcagtttctccctttaactcattctcat |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31883723 |
tcagtggatggatcctgctcaaatgtgtcgctatcttcatctgtatcatcctccgagtttggaagttggtcagcagtttctccctttaactcattctcat |
31883624 |
T |
|
| Q |
101 |
tacacaaatcaccttgaactggcacaatttgttgctgctgcgacgaaagaacatttgcaatagctttaatggcagcagatgcctggtaatggtcaactgc |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31883623 |
tacacaaatcaccttgaactggcacaatttgtttctgctgcgacgaaagaacatttgcaatagctttaatggcagcagatgcctggtaatggtcaactgc |
31883524 |
T |
|
| Q |
201 |
ctcatcaacagcaatgccatt |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
31883523 |
ctcatcaacagcaatgccatt |
31883503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33477077 - 33477297
Alignment:
| Q |
1 |
tcagtggatggatcctgctcaaatgtgtcgttatcttcatctgtatcatcctccgagtttggaagttggtcagcagtttctccctttaactcattctcat |
100 |
Q |
| |
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|||||||||||||||| |||| ||| ||| ||||||||||||||| |||| | | || |||||||||||||||||||||| | | | ||||||||| | |
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| T |
33477077 |
tcagtggatggatcctcctcagatgcgtcactatcttcatctgtataatccccagtgtctggaagttggtcagcagtttcttcatccagctcattctcgt |
33477176 |
T |
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| Q |
101 |
tacacaaatcaccttgaactggcacaatttgttgctgctgcgacgaaagaacatttgcaatagctttaatggcagcagatgcctggtaatggtcaactgc |
200 |
Q |
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|| | ||||| ||||||||||| ||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33477177 |
tatataaatccccttgaactggtacatttctttgctgctgggacgaaagaacatttgcaatagctttaatggcagcagatgcctggttatggtcaactgc |
33477276 |
T |
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| Q |
201 |
ctcatcaacagcaatgccatt |
221 |
Q |
| |
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||| |||||| | |||||||| |
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| T |
33477277 |
ctcgtcaacatctatgccatt |
33477297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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