View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_low_7 (Length: 555)
Name: NF15960_low_7
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 169 - 541
Target Start/End: Original strand, 39209354 - 39209722
Alignment:
| Q |
169 |
atcattttgaactgcagttcaccgggcgggaaaaaatttatttatgaatttttgggacaaaattacgttgatacccttatgttgtaaaacatgcgtgtac |
268 |
Q |
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| T |
39209354 |
atcatttttaactgcagttcgccgggcgggaaaaatttaatttatgaatttttgggacaaaattacgttggtacccttatgttgtaaaacatgcatgtac |
39209453 |
T |
|
| Q |
269 |
catacattgctcgccatgttggaggatggaaatttcaaacctggtgcatcacgttgtttatgctcagaggtgatgatgataactccacattggacggtgc |
368 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39209454 |
catacattgctcgcaatgttggaggatggaaatttcaaacctggtgcatcacgttgtttatgctcataggtgatgatgataactccacattggacggtg- |
39209552 |
T |
|
| Q |
369 |
acacacactgcacaagaggtgaccaattgatgcaagcttctcttttcttcctttccttctatacaagagaaacaatcaccaccaacataaaggtgtcttc |
468 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39209553 |
---catactgcacaagaggtgaccaattgatgcaagcttctcttttcttcctttccttctatacaagagaaacaatcaccaccaacataaaggtgtcttc |
39209649 |
T |
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| Q |
469 |
tccctcacactgttttccccttctttatcgtcctttccctcacctccttctccttgccaccatccaatcttct |
541 |
Q |
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| T |
39209650 |
tccctcacactgttttccccttctttatcgtccttcccctcacctccttctccttgccaccatccaatcttct |
39209722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 104 - 541
Target Start/End: Complemental strand, 27514589 - 27514144
Alignment:
| Q |
104 |
tatcataatattataaatggaacacaaacctgcaagtttgccctaatttaatcctttgaaaatccatcattttgaactgcagttcaccgggcgggaaaaa |
203 |
Q |
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| T |
27514589 |
tatcataatattataaatggaacacaaacctgcaagtttgccctaatttaatcctttgaaaatccatcattttcaactgcagttaatcgggcgggaaaaa |
27514490 |
T |
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| Q |
204 |
atttatttatgaatttttgggacaaaattacgttgatacccttatgttgtaaaacatgcgtgt-accatacattgctcgccatgttggaggatggaaatt |
302 |
Q |
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|| ||| |||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||| |||||||||||||||||||||||||| ||||||||| |
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| T |
27514489 |
tttaattaatgagtttttgggacaaaattacgtttatacccttatgttgtaaaacttgcatgtaaccatacattgctcgccatgttggagaatggaaatt |
27514390 |
T |
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| Q |
303 |
tcaaacctggtgcatcacgttgtttatgctcagaggtgatgatgataactccacattggacggtgcacacacactgcacaagagg-tgaccaattgatgc |
401 |
Q |
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| T |
27514389 |
tcaaacctgctgcatcacgttgtttatgctcaggggtcatgatgataactccacattggacggtg----cacactgcacaagaggttgaccaattgctgc |
27514294 |
T |
|
| Q |
402 |
aagcttctcttttcttcctttccttctatacaagagaaacaatcaccaccaacataa----------aggtgtcttctccctcacactgttttccccttc |
491 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
27514293 |
aagcttctcttttcttcctttccttctatacaagagaaacaatcatcaccaacataaatccaaacctaagtgtcttctccctcacactgttttccccttc |
27514194 |
T |
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| Q |
492 |
tttatcgtcctttccctcacctccttctccttgccaccatccaatcttct |
541 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27514193 |
tttatcgtcctttccctcacctccttctccttgccaccatccgatcttct |
27514144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 121 - 248
Target Start/End: Original strand, 23016965 - 23017092
Alignment:
| Q |
121 |
tggaacacaaacctgcaagtttgccctaatttaatcctttgaaaatccatcattttgaactgcagttcaccgggcgggaaaaaatttatttatgaatttt |
220 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| || ||| |||| |||| |
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| T |
23016965 |
tggaacacaaacctgcaagttttccctaatttaatcctttgaaaatccatcattttcaactgcagttcatcgggcgggaaaaatttaattaatgagtttt |
23017064 |
T |
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| Q |
221 |
tgggacaaaattacgttgatacccttat |
248 |
Q |
| |
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|||||||||||||| || |||||||||| |
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| T |
23017065 |
tgggacaaaattacatttatacccttat |
23017092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 27637520 - 27637431
Alignment:
| Q |
3 |
tgttattacaatagatcatctatgctatgatgattatcaatatgatatttatgagtttaatttagtttcatggtgtttcatttattttgt |
92 |
Q |
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| T |
27637520 |
tgttattacaatagctcatctatgctatgatgattatcaatatgatatttatgagtttaatttagtttcatgatgtttcatttattttgt |
27637431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 37353694 - 37353626
Alignment:
| Q |
22 |
ctatgctatgatgattatcaatatgatatttatgagtttaatttagtttcatggtgtttcatttatttt |
90 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| |
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| T |
37353694 |
ctatactatgatgattatcaatatgatatttatgagtttaatttagtttcatgttgttacttttatttt |
37353626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 37365668 - 37365600
Alignment:
| Q |
22 |
ctatgctatgatgattatcaatatgatatttatgagtttaatttagtttcatggtgtttcatttatttt |
90 |
Q |
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| T |
37365668 |
ctatactatgatgattatcaatatgatatttatgagtttaatttagtttcatgttgttacttttatttt |
37365600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 36407074 - 36407015
Alignment:
| Q |
105 |
atcataatattataaatggaacacaaacctgcaagtttgccctaatttaatcctttgaaa |
164 |
Q |
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|||||||||||||||||||||||| || |||||| ||||||||||||| |||||||||| |
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| T |
36407074 |
atcataatattataaatggaacaccaagctgcaaatttgccctaatttgttcctttgaaa |
36407015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 18449260 - 18449208
Alignment:
| Q |
112 |
tattataaatggaacacaaacctgcaagtttgccctaatttaatcctttgaaa |
164 |
Q |
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| T |
18449260 |
tattataaatggaacaccaagctccaaatttgccctaatttgctcctttgaaa |
18449208 |
T |
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