View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_low_70 (Length: 217)
Name: NF15960_low_70
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_70 |
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Alignment Details
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 2754358 - 2754276
Alignment:
| Q |
18 |
aagtcaagttcatttatccaaggcttgttatggggtaactgcaatactaaattaatatatattgtgcattttaagtctcaata |
100 |
Q |
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| T |
2754358 |
aagtcaagttcatttatccaaggcttgttatggggtaactgcaatactaaattaatatatattgtgcattttaagtctcaata |
2754276 |
T |
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Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 2754244 - 2754172
Alignment:
| Q |
132 |
aatattgtagggtatttattcaagtgctatgtagttatagtaccctaccattgtatgcaattgttacacaggt |
204 |
Q |
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| T |
2754244 |
aatattgtagggtatttattcaagtgctatgtagttatagtaccctaccattgtatgcaattgttacacaggt |
2754172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 2746340 - 2746273
Alignment:
| Q |
137 |
tgtagggtatttattcaagtgctatgtagttatagtaccctaccattgtatgcaattgttacacaggt |
204 |
Q |
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| T |
2746340 |
tgtaggttattgattcaggtcatatgtagttatagtaccctaccactctatgcaattgtcacacaggt |
2746273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 55324449 - 55324514
Alignment:
| Q |
139 |
tagggtatttattcaagtgctatgtagttatagtaccctaccattgtatgcaattgttacacaggt |
204 |
Q |
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| T |
55324449 |
tagggtatttattcaggtactatgtagctacagcaccctaccactctacgcagttgttacacaggt |
55324514 |
T |
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