View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15960_low_75 (Length: 204)
Name: NF15960_low_75
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_75 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 46630963 - 46631139
Alignment:
| Q |
1 |
gcatttgaatggaggtggtaatggtagctacatatttgcaagttacttggttaagttaaagagtagaggtcaattgttgtaattttttaagctacctgct |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46630963 |
gcatttgaatggaggtggtaaaggtagctacatatttgcaagttacttggttaagttaaagagtagaggtcaattgttgtaattttttaagctacctgct |
46631062 |
T |
|
| Q |
101 |
atctgtcatcatggagtttctgactgttgtaaacaaattggttttgaatgtatcgtcgatgctcctcttgccttccttgc |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
46631063 |
atctgtcatcatggagtttctgactgttgtaaacaaattggttttgaatgta---tcgatgctcctcttgccttacttgc |
46631139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 151
Target Start/End: Complemental strand, 46172792 - 46172668
Alignment:
| Q |
26 |
agctacatatttgcaagttacttggttaagttaaagagtagaggtcaattgttgtaattttttaagctacct-gctatctgtcatcatggagtttctgac |
124 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||| ||||| ||||| || || | |||||||||| || ||||||||||||||||| || | | | |
|
|
| T |
46172792 |
agctaaatatttgcaagccacttggttaagttaaagaatagagatcaatagtggtta-tttttaagctttctacctatctgtcatcatggaattccag-c |
46172695 |
T |
|
| Q |
125 |
tgttgtaaacaaattggttttgaatgt |
151 |
Q |
| |
|
| ||| ||||||||||| ||||||||| |
|
|
| T |
46172694 |
ttttggaaacaaattggctttgaatgt |
46172668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 46620454 - 46620503
Alignment:
| Q |
25 |
tagctacatatttgcaagttacttggttaagttaaagagtagaggtcaat |
74 |
Q |
| |
|
|||||| ||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
46620454 |
tagctagatatttgcaagccaattggttaagttaaagagtagaggtcaat |
46620503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 15767967 - 15767815
Alignment:
| Q |
2 |
catttgaatggaggtggtaatggtagctacatatttgcaagttacttggttaagttaaagagtagaggtcaattgttgtaattttttaagctacctg-ct |
100 |
Q |
| |
|
||||||| ||||| | ||| || |||||| || ||| |||| ||||||||||||||||||||||||||||||| || ||||||||||||| |||||| || |
|
|
| T |
15767967 |
catttgattggagatcgtagtgttagctaaatgttttcaagctacttggttaagttaaagagtagaggtcaatagtggtaattttttaagttacctgcct |
15767868 |
T |
|
| Q |
101 |
atctgtcatcatggagtttctgactgttgtaaacaaattggttttgaatgtat |
153 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
15767867 |
atctgtcatcatggagtttctgacttttgtaatcaaattggttttgaatgtat |
15767815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 2 - 152
Target Start/End: Complemental strand, 18373847 - 18373693
Alignment:
| Q |
2 |
catttgaatggaggtggtaatggtagctacatatttgcaagttacttggttaagttaaagagtagaggtcaattgttgtaattttttaagctacctg-ct |
100 |
Q |
| |
|
||||| ||||||| ||||| || |||||| ||||||||||| | |||||||||||||||||||||||||||| ||| | | ||||||| ||| || || |
|
|
| T |
18373847 |
catttcaatggagatggtagtgttagctagatatttgcaagccaattggttaagttaaagagtagaggtcaatagttattttcttttaagatacatgcct |
18373748 |
T |
|
| Q |
101 |
atctg---tcatcatggagtttctgactgttgtaaacaaattggttttgaatgta |
152 |
Q |
| |
|
||||| |||||||||||||| |||| ||| ||||||| |||||| ||||||| |
|
|
| T |
18373747 |
atctgtcatcatcatggagtttttgacctttggaaacaaaatggtttagaatgta |
18373693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University