View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_low_8 (Length: 547)
Name: NF15960_low_8
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_8 |
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| [»] scaffold1202 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 106 - 537
Target Start/End: Original strand, 4518467 - 4518895
Alignment:
| Q |
106 |
tgcacattcaaatcttagacacttatggaaaaggttcacgttgaatgctccttcacaatgatgctagattcttgcagaaattgaagcatgttcaatttca |
205 |
Q |
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| T |
4518467 |
tgcacattcaaatcttagacacttatggaaaaggttcacgttgaatgctcattcacaatgatgctagattcttgcagaaattgaagcatgttcaatttca |
4518566 |
T |
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| Q |
206 |
atttatctcatccacgtggagtcatgatacaaaaagatggagtagtattgataatataaaaagatcattgtttgcaaaacctctaggcttatatctaaga |
305 |
Q |
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| T |
4518567 |
atttatctcatccacgtggggtcatgatacaaaaagatggagtagtattgataatataaaaagatcattgtttgcaaaacctctaggcttatatctaaga |
4518666 |
T |
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| Q |
306 |
gattgttttggacgcgatatgtttgaagtccgttgagcaagaagttggcatgagtgggatcacggatagggtttttgcaatatccgtcatccttactatg |
405 |
Q |
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| T |
4518667 |
gattgttttggacgcgatatgtttgaagtccgctgagcaagaagttggcatgagtgggatcacggatagggtttttgcaatattcgtcatccttactatg |
4518766 |
T |
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| Q |
406 |
ttttcgaaatcaacttacacttttgatgattcccctcaactcaacgcacctcttttgattgtgtatgactatgagccacactatatcaagttgtagtttt |
505 |
Q |
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| T |
4518767 |
ttttcgaaatcaacttacacttt---tgattcccctcaactcaacgcacctcttttgattgtgtatgattatgagccacactatatcaagttgtagtttt |
4518863 |
T |
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| Q |
506 |
tattaggctaaagtgcacttttcgtcccctat |
537 |
Q |
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| T |
4518864 |
tattaggctaaagtgcacttttcgccccctat |
4518895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 367
Target Start/End: Original strand, 37863693 - 37863754
Alignment:
| Q |
306 |
gattgttttggacgcgatatgtttgaagtccgttgagcaagaagttggcatgagtgggatca |
367 |
Q |
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| T |
37863693 |
gattgttttgaacgtgatttgtttgaaatcgcctgagaaagaagttggcatgagtgggatca |
37863754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1202 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1202
Description:
Target: scaffold1202; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 538
Target Start/End: Original strand, 1856 - 1886
Alignment:
| Q |
508 |
ttaggctaaagtgcacttttcgtcccctatg |
538 |
Q |
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| T |
1856 |
ttaggctaaagtgcacttttcgtcccctatg |
1886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 528
Target Start/End: Complemental strand, 3227708 - 3227678
Alignment:
| Q |
498 |
gtagtttttattaggctaaagtgcacttttc |
528 |
Q |
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| T |
3227708 |
gtagtttttattaggctaaagtgcacttttc |
3227678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 538
Target Start/End: Original strand, 28173723 - 28173756
Alignment:
| Q |
505 |
ttattaggctaaagtgcacttttcgtcccctatg |
538 |
Q |
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| T |
28173723 |
ttattaggctaaagtgcacttttcgccccctatg |
28173756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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