View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15960_low_9 (Length: 522)
Name: NF15960_low_9
Description: NF15960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15960_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 500
Target Start/End: Complemental strand, 10901373 - 10900895
Alignment:
| Q |
18 |
attttttagatgataatactagaagttcgtggttttcctctgatacatcaataaatgatttcatgaaaccaacctgatctcgtattggttctcggatgag |
117 |
Q |
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| T |
10901373 |
atttttgagatgataatactagaagttcgtggttttcctctgatacatcaataaatgatttcatgaaacc---ctgatctcgtattggttctcggatgag |
10901277 |
T |
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| Q |
118 |
tcgcacaaaaattgaagcatattcactgccaaccaattcgttcaaagtatttcccaacttatgcaattaattttaaatttgtattggtctcaccatgtat |
217 |
Q |
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| T |
10901276 |
tcgcacaaaaattgaagcatattcactgccaaccaactcgttcaaagtatttcccaacttatgcaattaattttaaatttgtattggtctcaccatgtat |
10901177 |
T |
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| Q |
218 |
gagtattaaagtaatcaagttgagacatccattgtcatcccttgtagtcagaatgataactatttcaaatccgtaaattcaatgtgccaagtaagttgtg |
317 |
Q |
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| T |
10901176 |
gagtattaaagtaatcaagttgagacatccattgtcatcccttgtagtcagaatgataactatttcaaatccgtaaattcaatgtaccaagtaagttgtg |
10901077 |
T |
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| Q |
318 |
agttttatgagatacagaaaaaacaacttacggacaacattttctatagaatatcgaagaaaaaagagagaaggcaggnnnnnnnttattatttgtagta |
417 |
Q |
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| T |
10901076 |
agttttatgagatacagaaaaaacaacttacggacaacattttctatagaatatcgaagaaaaaagagagaaggcaggaaaaaaattattatttgtagta |
10900977 |
T |
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| Q |
418 |
atgatacacttgtagttgttgaagttgaaaactaaatttttcattttcacactgtaatttataatttttagcttttgatctct |
500 |
Q |
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| T |
10900976 |
atgatacac-tgtagttgttgaagttgaaaactaaatttttcattttcaccctgtaatttataatttttagcttttgatctct |
10900895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 11005419 - 11005609
Alignment:
| Q |
25 |
agatgataatactagaagttcgtggttttcctctgatacatcaataaatgatttcatgaaaccaacctgatctcgtattggttctcggatgagtcgcaca |
124 |
Q |
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||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
11005419 |
agatggtaatactagaagttcttggtcttcctctgatacatcaataaatgatttcatggaaccaacctgatctcgtgttggttctcggatgagttgcaca |
11005518 |
T |
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| Q |
125 |
aaaattgaagcatattcactgccaaccaattcgttca-aagtatttcccaacttatgcaattaattttaaatttgtattggtctcaccatg |
214 |
Q |
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| T |
11005519 |
aaaattgaagcatattcactgccaaccaactctttcagaagtatttcccaacttatgcaattaattttaaatctgtattggtatcaccatg |
11005609 |
T |
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