View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15961_high_12 (Length: 237)
Name: NF15961_high_12
Description: NF15961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15961_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 28 - 193
Target Start/End: Complemental strand, 41705332 - 41705167
Alignment:
| Q |
28 |
aagattgtaaaaatcaaatcaatgattcgataaactcaaacatacattccaaattaattaaattggattgtttttgtccatgtttaaatctaatttgaac |
127 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41705332 |
aagatagtaaaaatcaaatcaatgatccgataaactcaaacatacattccaaattaattaaattggattgtttt-gtccatgtttaaatctaatttgaac |
41705234 |
T |
|
| Q |
128 |
caaacaaatgaaatttgatctctattagtttaagtatcgttttt-tgtcatccaagatatatatata |
193 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||| | ||||||||| |
|
|
| T |
41705233 |
caaacaaatgaaatttgatctctattaatttaagtatcgtttttgcgtcatccaaaaaatatatata |
41705167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 41705159 - 41705105
Alignment:
| Q |
183 |
atatatatatagaaccttttctaaatccctttaaattatactaatatagtgcaat |
237 |
Q |
| |
|
||||||||||| ||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
41705159 |
atatatatatataaccttttctaaatctcgttaaattatactaatatagtgcaat |
41705105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University