View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15961_high_3 (Length: 583)
Name: NF15961_high_3
Description: NF15961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15961_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 10 - 557
Target Start/End: Original strand, 25633904 - 25634452
Alignment:
| Q |
10 |
catcatcatcaggaatgttgagccaaaggccatgagaaatagcagttgggacaccctctcgaagactgaacggatagccgcgaacaaaatccgcaccttc |
109 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25633904 |
catcataatcaggaatgttgagccaaaggccatgagaaatagcagttgggacaccctctcgaagactgaacggatagccgcgaacaaaatctgcaccttc |
25634003 |
T |
|
| Q |
110 |
tctatatgggtcatatagagtgttgaagaaaaatggggttgatggagtcagcaagttcttaatgtgctgctgcagagcatcaatttctttgccagatgga |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25634004 |
tctatatgggtcatatagagtgttgaagaaaaatggggttgatggagtcagcaagttcttaatgtgctgctgcagtgcatcaatttctttgccagatgga |
25634103 |
T |
|
| Q |
210 |
tctttggcaacctgaacaaaccaaacatatataagtcctaaggaggatctagcaatataacaaaccctgctcattatcaacaacagaaaagaaacaaact |
309 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25634104 |
tctttggcaacctgaaaaaaccaaacatatatcagtcctaaggaggatctagcaatataacaaaccctgctcattatcaacaacagaaaagaaacaaact |
25634203 |
T |
|
| Q |
310 |
ctgctaatatgatcttaacatactatcaaatataaaacactgacacaggcacgacactaatatgtagacactgataatgatttgtgaaaataagagtgat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||| ||||||||||||||| ||||||||||| |
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| T |
25634204 |
ctgctaatatgatcttaacatactatcaaatataaaacaccgacacaggcacgacactgacatgtagacacttataatgatttgtgaagataagagtgat |
25634303 |
T |
|
| Q |
410 |
taaatgtaatcaaaatgtatgtatgtcggacactaacacatgcaagtcaccgacatgccttaaatctaaaatgtcggtgctaatcatagagtgacagctg |
509 |
Q |
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||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
25634304 |
taaatgtaatc-aaatgtatctatgtcggacactgacacatgcaagtcaccgacatgccttaaatctaaaatgccgctgctaatcatagagtgacagctg |
25634402 |
T |
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| Q |
510 |
tcataataaaataatatgtcctatcagatttcaaaag--aatcagtctaa |
557 |
Q |
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||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25634403 |
tcacaataaaataatatgtcctatcagatttcaaaagataatcagtctaa |
25634452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 10 - 222
Target Start/End: Original strand, 5580645 - 5580857
Alignment:
| Q |
10 |
catcatcatcaggaatgttgagccaaaggccatgagaaatagcagttgggacaccctctcgaagactgaacggatagccgcgaacaaaatccgcaccttc |
109 |
Q |
| |
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|||||| ||| || |||||||||||||| |||||||||||||| ||||||||||| || |||||||| || || || || ||||||||||| |||||||| |
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| T |
5580645 |
catcataatctgggatgttgagccaaagtccatgagaaatagctgttgggacaccttcacgaagactaaaagggtatccacgaacaaaatcagcaccttc |
5580744 |
T |
|
| Q |
110 |
tctatatgggtcatatagagtgttgaagaaaaatggggttgatggagtcagcaagttcttaatgtgctgctgcagagcatcaatttctttgccagatgga |
209 |
Q |
| |
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|||| | || ||||| || || ||||| || ||||| ||||||||| || | ||||||||||||||||| || |||| |||| ||| ||||||||| |
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| T |
5580745 |
tctaaaaggatcataaagggtattgaaaaacaatggagttgatggacacaaaaggttcttaatgtgctgctcaagtgcattgatttgttttccagatgga |
5580844 |
T |
|
| Q |
210 |
tctttggcaacct |
222 |
Q |
| |
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|| |||||||||| |
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| T |
5580845 |
tcattggcaacct |
5580857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 5018438 - 5018556
Alignment:
| Q |
18 |
tcaggaatgttgagccaaaggccatgagaaatagcagttgggacaccctctcgaagactgaacggatagccgcgaacaaaatccgcaccttctctatatg |
117 |
Q |
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||||| || |||||||||||||| ||||||| ||||||||| ||||| || || |||||||| || ||||| ||||| ||||| ||||||||||| |||| |
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| T |
5018438 |
tcagggatattgagccaaaggccgtgagaaacagcagttggtacaccttcacggagactgaaggggtagccacgaacgaaatctgcaccttctctgtatg |
5018537 |
T |
|
| Q |
118 |
ggtcatatagagtgttgaa |
136 |
Q |
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| ||||| ||||||||||| |
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| T |
5018538 |
gttcatagagagtgttgaa |
5018556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 20178208 - 20178038
Alignment:
| Q |
10 |
catcatcatcaggaatgttgagccaaaggccatgagaaatagcagttgggacaccctctcgaagactgaacggatagccgcgaacaaaatccgcaccttc |
109 |
Q |
| |
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|||||| |||||| |||||||||||||| || ||||||| ||||| |||||||| || ||||||||||| || || || || || ||||| ||||| || |
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| T |
20178208 |
catcataatcaggtatgttgagccaaagaccgtgagaaacggcagtggggacaccttcacgaagactgaaagggtatccacggacgaaatcggcaccgtc |
20178109 |
T |
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| Q |
110 |
tctatatgggtcatatagagtgttgaagaaaaatggggttgatggagtcagcaagttcttaatgtgctgct |
180 |
Q |
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||| ||||| || || || ||||||||||||||||| || |||||| | || | |||||||||||||||| |
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| T |
20178108 |
tctgtatggatcgtaaagggtgttgaagaaaaatggagtggatggactgaggagattcttaatgtgctgct |
20178038 |
T |
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