View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15961_high_8 (Length: 312)
Name: NF15961_high_8
Description: NF15961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15961_high_8 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 25634809 - 25634516
Alignment:
| Q |
18 |
gtttgggactacattgatgattaacgttgttggttgtgataccttagctggaatttgacaagatcaatgttgtttccttggtctctctctatggactttt |
117 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25634809 |
gtttgggactacattgatgattcacgttgttggttgtgataccttagctggaatttgacaagatcaatgttgtttccttggtctctctctatggactttt |
25634710 |
T |
|
| Q |
118 |
gtgacattgggattattttaaaaaatttgaannnnnnnngtcgttcttattgttctatattggatttgttgttaagattttcacgtctctactacagtga |
217 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25634709 |
gtgacattgggattattttaaaaaaattgaattttttt-gtcgttcttattgttctatattggatttgttgttaagattttcacgtctctactacagtga |
25634611 |
T |
|
| Q |
218 |
acttctctgtagtacttttcatttgaattgtttttccaatttgattggtaagagaaactgcatgttctctgtgttttaagatctagcatagttac |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25634610 |
acttctctgtagtacttttcatttgaattgtttttccaatttgattggtaagagaaactgcatgttctctatgttttaagatctagcatagttac |
25634516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University