View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15961_low_10 (Length: 273)
Name: NF15961_low_10
Description: NF15961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15961_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 41863337 - 41863581
Alignment:
| Q |
1 |
tcccattctagttatgatcaaccttgttccattgcataaaccattttgaagatctaaattcctcaacaacatgaccggtattccaacttttagtcttaat |
100 |
Q |
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| T |
41863337 |
tcccattctggttatgatcaaccttgttccattgcataaaccattttgaagatctaaattcctcaacagcatgaccggtactccaacttttagtcttaat |
41863436 |
T |
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| Q |
101 |
ttatgatttggaagtcctgaagcaacaattgtgttttaggaattcgggtgtatgcacgccataaattgcatcatcgtgaaaattgcatgtaaccgatgaa |
200 |
Q |
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| T |
41863437 |
ttgtgatttggaagtcctgaagcaacaattgtg-tttaggaattcgggtgtatgcatgccataaattgcatcatcgtgaaaattgcgtgtaaccgatgaa |
41863535 |
T |
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| Q |
201 |
tcctagcttaggctctgtcgtttttcatgttgatgaagaaaactat |
246 |
Q |
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| T |
41863536 |
tcctagcttaggctctgtcgtttttcatgttgatcaagaaaactat |
41863581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 49200525 - 49200661
Alignment:
| Q |
1 |
tcccattctagttatgatcaaccttgttccattgcataaaccattttgaagatctaaattcctcaacaacatgaccggtattccaacttttagtcttaat |
100 |
Q |
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| T |
49200525 |
tcccattctagttatgattaaccttgttccattgaataaatc-ttttgtatatctaaatttctcaacaacatgaccgacactccaacctttagtcttaat |
49200623 |
T |
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| Q |
101 |
ttatga--tttggaagtcctgaagcaacaattgtgttt |
136 |
Q |
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| T |
49200624 |
ttgtgatttttggaactcttgaagcaacaattgtgttt |
49200661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 26626599 - 26626637
Alignment:
| Q |
1 |
tcccattctagttatgatcaaccttgttccattgcataa |
39 |
Q |
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| T |
26626599 |
tcccattctggttatgattaaccttgttccattgcataa |
26626637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 34417290 - 34417328
Alignment:
| Q |
1 |
tcccattctagttatgatcaaccttgttccattgcataa |
39 |
Q |
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| T |
34417290 |
tcccattctagttatgattaaccttgttccgttgcataa |
34417328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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