View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15961_low_11 (Length: 250)

Name: NF15961_low_11
Description: NF15961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15961_low_11
NF15961_low_11
[»] chr1 (9 HSPs)
chr1 (1-238)||(41863027-41863266)
chr1 (133-237)||(9825619-9825724)
chr1 (125-236)||(38685434-38685546)
chr1 (142-236)||(23480945-23481040)
chr1 (133-199)||(17723666-17723732)
chr1 (127-199)||(38508657-38508729)
chr1 (177-236)||(5429389-5429449)
chr1 (21-89)||(9825517-9825585)
chr1 (144-196)||(49233831-49233883)
[»] chr2 (5 HSPs)
chr2 (13-238)||(24322892-24323113)
chr2 (21-238)||(41582313-41582523)
chr2 (147-236)||(28404828-28404918)
chr2 (135-209)||(16969951-16970025)
chr2 (142-202)||(20640126-20640186)
[»] chr3 (5 HSPs)
chr3 (143-238)||(15993289-15993385)
chr3 (142-236)||(17757705-17757800)
chr3 (142-236)||(19059025-19059120)
chr3 (142-236)||(2702168-2702263)
chr3 (143-232)||(53047206-53047296)
[»] chr4 (8 HSPs)
chr4 (26-237)||(49200224-49200428)
chr4 (142-236)||(29968268-29968363)
chr4 (28-235)||(33315490-33315690)
chr4 (142-236)||(47428065-47428160)
chr4 (178-238)||(47965961-47966022)
chr4 (142-236)||(2479322-2479417)
chr4 (142-236)||(41851158-41851252)
chr4 (142-202)||(18000598-18000658)
[»] scaffold0192 (1 HSPs)
scaffold0192 (126-235)||(19400-19510)
[»] chr8 (11 HSPs)
chr8 (49-227)||(43418491-43418662)
chr8 (142-236)||(1852227-1852322)
chr8 (142-236)||(1199552-1199647)
chr8 (136-187)||(15880807-15880858)
chr8 (142-236)||(604155-604250)
chr8 (147-238)||(5241198-5241289)
chr8 (142-213)||(30437156-30437227)
chr8 (171-236)||(1851110-1851176)
chr8 (143-236)||(44429580-44429673)
chr8 (149-198)||(32721035-32721084)
chr8 (143-192)||(44433316-44433365)
[»] chr7 (6 HSPs)
chr7 (142-236)||(16375727-16375822)
chr7 (142-236)||(45286465-45286560)
chr7 (142-236)||(11642413-11642508)
chr7 (142-236)||(9141280-9141375)
chr7 (142-202)||(45418596-45418656)
chr7 (150-199)||(48844403-48844452)
[»] scaffold1155 (1 HSPs)
scaffold1155 (127-236)||(771-881)
[»] scaffold0345 (1 HSPs)
scaffold0345 (127-236)||(9336-9446)
[»] scaffold0105 (1 HSPs)
scaffold0105 (127-236)||(29534-29644)
[»] chr5 (6 HSPs)
chr5 (142-233)||(31487296-31487388)
chr5 (142-236)||(19123205-19123300)
chr5 (142-236)||(14164496-14164591)
chr5 (142-236)||(31486278-31486373)
chr5 (178-238)||(11298744-11298805)
chr5 (180-216)||(37340088-37340124)
[»] scaffold0013 (2 HSPs)
scaffold0013 (142-236)||(104681-104776)
scaffold0013 (165-236)||(127353-127425)
[»] chr6 (4 HSPs)
chr6 (145-236)||(1394066-1394158)
chr6 (150-236)||(7018394-7018481)
chr6 (180-238)||(15298163-15298222)
chr6 (67-95)||(23307348-23307376)
[»] scaffold0059 (1 HSPs)
scaffold0059 (142-236)||(71289-71384)
[»] scaffold0121 (1 HSPs)
scaffold0121 (147-208)||(25534-25595)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 41863266 - 41863027
Alignment:
Q  1 ctatgtcacctt--gacatccaaatttctttcaagttttaaagacgacagttccctttaattgtctcttttgccatgactattaacaagagtcaagggca 98  Q
    ||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  41863266 ctatgtcaccttcagacatccgaatttctttcaagttttaaagacgacagttccctttagttgtctcttttgccatgactattaacaagagtcaacggca 41863167  T
Q  99 atcaatgcgacgtgttggattatatatttatatctcccaatgtctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaag 198  Q
    ||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41863166 atcaatgcgacatgttggattatatatttatatctcccaacatctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaa 41863067  T
Q  199 gactgaaaatattgataataatgaagatggtgaagatatt 238  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41863066 gactgaaaatattgataataatgaagatggtgaagatatt 41863027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 237
Target Start/End: Original strand, 9825619 - 9825724
Alignment:
Q  133 tcccaatgtctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattga-taataatgaagatggtga 231  Q
    |||||| | ||||||||||  |||||||| ||||||||||||| | ||||||||||||||||||| ||||||| ||||||| |||||||||||||||| |    
T  9825619 tcccaacgactgtattttcgtatggacaactatatgttgttgtataaagagttacatccagagaatgactgaagatattgattaataatgaagatggtaa 9825718  T
Q  232 agatat 237  Q
    ||||||    
T  9825719 agatat 9825724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 236
Target Start/End: Original strand, 38685434 - 38685546
Alignment:
Q  125 tttatatctcccaatgtctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaa 223  Q
    ||||||||| |||| | |||||||||| || | ||| || ||||||||||| | |||||||||||||||||||||||| ||||||||||| | | |||||    
T  38685434 tttatatctaccaacgcctgtattttctcacgaacagttgtatgttgttgtttaaagagttacatccagagaaggactaaaaatattgatcactgatgaa 38685533  T
Q  224 gatggtgaagata 236  Q
    |||||||||||||    
T  38685534 gatggtgaagata 38685546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 23481040 - 23480945
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatggtgaagata 236  Q
    |||||||||| || ||||| || ||||||| | | |||||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||    
T  23481040 ctgtattttctcaaggacagttgtatgttgctatttcaagagttacatccagagaaggactaaagatattgatcactgatgaagatggtgaagata 23480945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 17723732 - 17723666
Alignment:
Q  133 tcccaatgtctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaagg 199  Q
    |||||| |||||| ||||||||||||||||||||||| ||||| || |||||||||| |||||||||    
T  17723732 tcccaacgtctgtcttttcacatggacaattatatgtggttgtttccagagttacattcagagaagg 17723666  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 199
Target Start/End: Original strand, 38508657 - 38508729
Alignment:
Q  127 tatatctcccaatgtctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaagg 199  Q
    ||||||| |||| | |||| ||||||||||||||||||||||| ||||| || ||||||||||| ||||||||    
T  38508657 tatatctaccaacgcctgtcttttcacatggacaattatatgtggttgtgtcgagagttacatcaagagaagg 38508729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 5429389 - 5429449
Alignment:
Q  177 tcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatggtgaagata 236  Q
    |||||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||    
T  5429389 tcaagagttacatccagagaaggactaaagatattgatcactgatgaagatggtgaagata 5429449  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 9825517 - 9825585
Alignment:
Q  21 aatttctttcaagttttaaagacgacagttccctttaattgtctcttttgccatgactattaacaagag 89  Q
    |||| ||||||| ||||||||||||| ||||||||||   ||||  ||||||||||| |||||||||||    
T  9825517 aattcctttcaaattttaaagacgacggttccctttagccgtctaatttgccatgaccattaacaagag 9825585  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 49233831 - 49233883
Alignment:
Q  144 gtattttcacatggacaattatatgttgttgtctcaagagttacatccagaga 196  Q
    |||||||||||| | ||||||||||||||| | ||||||||||| || |||||    
T  49233831 gtattttcacattgtcaattatatgttgttatttcaagagttacttcaagaga 49233883  T

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Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 24323113 - 24322892
Alignment:
Q  13 gacatccaaatttctttcaagttttaaagacgacagttccctttaattgtctcttttgccatgactattaacaagagtcaagggcaatcaatgcgacgtg 112  Q
    |||||||||||| ||||||||||| ||||||| |||||||||||| || |||| |||| |||||||||||||||||| |||||||||||| |||||| ||    
T  24323113 gacatccaaattcctttcaagtttcaaagacggcagttccctttagttctctcatttgtcatgactattaacaagagccaagggcaatcattgcgacatg 24323014  T
Q  113 ttggattatatatttatatctcccaatgtctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattg 212  Q
    |||||||||||        ||||||| || |||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  24323013 ttggattatat--------ctcccaacgtatgtatttttacatggacaattatatgttgatgtctcaagagttacatccagagaatgactgaaaatattg 24322922  T
Q  213 at----aataatgaagatggtgaagatatt 238  Q
     |    ||||||||||||||||||||||||    
T  24322921 gtgataaataatgaagatggtgaagatatt 24322892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 41582313 - 41582523
Alignment:
Q  21 aatttctttcaagttttaaagacgacagttccctttaattgtctcttttgccatgactattaacaagagtcaagggcaatcaatgcgacgtgttggatta 120  Q
    |||| ||||||||||||||||||||||||| ||||||   ||||| |||| ||||||||||||||||||||| ||||||||| |||||| ||| |         
T  41582313 aattcctttcaagttttaaagacgacagtttcctttagcggtctcatttgtcatgactattaacaagagtcaggggcaatcattgcgacatgtgg----- 41582407  T
Q  121 tatatttatatctcccaatgtctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataa 219  Q
       | || |  ||||||| || |||||||||||||  |||  |||| |||||||| || ||||||||||| ||||||||| ||||||||||||| |||||    
T  41582408 ---agttgttcctcccaacgtttgtattttcacattaacagctatacgttgttgtatctagagttacatctagagaaggattgaaaatattgataaataa 41582504  T
Q  220 tgaagatggtgaagatatt 238  Q
      ||||||| |||||||||    
T  41582505 caaagatggagaagatatt 41582523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 28404828 - 28404918
Alignment:
Q  147 ttttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgataa-taatgaagatggtgaagata 236  Q
    |||||||||||||| |||||||| ||||| || |||||||||||||||||||   |||||||| |||||| | | ||||||||||| ||||    
T  28404828 ttttcacatggacagttatatgtggttgtttccagagttacatccagagaagagttgaaaatactgataactgacgaagatggtgaggata 28404918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 16969951 - 16970025
Alignment:
Q  135 ccaatgtctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaata 209  Q
    |||||| |||| |||||||||||||| ||||||||   ||| || |||||||| || |||||||| |||||||||    
T  16969951 ccaatgcctgtgttttcacatggacagttatatgtgactgtttccagagttacgtctagagaaggcctgaaaata 16970025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 20640186 - 20640126
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggact 202  Q
    ||||||||||  | ||||| || ||| ||| ||| ||||||||||||||||||||||||||    
T  20640186 ctgtattttcttacggacagttgtatattgctgtttcaagagttacatccagagaaggact 20640126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 15993385 - 15993289
Alignment:
Q  143 tgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatggtgaagatatt 238  Q
    ||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  15993385 tgtattttcacatggacaattatatgttcctgtctcaagaattacatccagagaaggactgaaaatattgataaataatgaacatggtgaagatatt 15993289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 17757705 - 17757800
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatggtgaagata 236  Q
    |||||||||| || ||||| || ||||||||||| |||||||||||||| |||||||||||||| || ||||| | | ||||||||||||||||||    
T  17757705 ctgtattttctcacggacagttgtatgttgttgtttcaagagttacatctagagaaggactgaagatgttgatcactgatgaagatggtgaagata 17757800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 19059025 - 19059120
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatggtgaagata 236  Q
    |||||||||| || ||||| || ||||||||||| |||||||||||||| |||||||||||||| || ||||| | | ||||||||||||||||||    
T  19059025 ctgtattttctcacggacagttgtatgttgttgtttcaagagttacatctagagaaggactgaagatgttgatcactgatgaagatggtgaagata 19059120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 2702168 - 2702263
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattga-taataatgaagatggtgaagata 236  Q
    |||||||||| || ||||| || ||||||| ||| |||||||||||||| ||||||||||| || ||||||| |  ||||||||||||| ||||||    
T  2702168 ctgtattttctcacggacagttgtatgttgctgtttcaagagttacatctagagaaggactaaagatattgattgctaatgaagatggtcaagata 2702263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 53047296 - 53047206
Alignment:
Q  143 tgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatggtgaa 232  Q
    ||||||||| || |||||  | ||||||| ||| |||||||||||||||||||||||||| || |||||||| | | ||||||||||||||    
T  53047296 tgtattttctcacggacagatgtatgttgctgtttcaagagttacatccagagaaggactaaatatattgatcagtgatgaagatggtgaa 53047206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 237
Target Start/End: Complemental strand, 49200428 - 49200224
Alignment:
Q  26 ctttcaagttttaaagacgacagttccctttaattgtctcttttgccatgactattaacaagagtcaagggcaatcaatgcgacgtgttggattatatat 125  Q
    ||||||||||| ||||| ||||||| | |||| ||||||| ||||||||||||||||||||||||||| | |||||| | | || |||||||  ||||      
T  49200428 ctttcaagtttcaaagatgacagtttcatttagttgtctcatttgccatgactattaacaagagtcaatgacaatcactccaacatgttggacaatat-- 49200331  T
Q  126 ttatatctcccaatgtctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattga-taataatgaag 224  Q
          ||||||| |  ||||||||| || |||||| ||||   |||||| | ||||||| ||||||||||||||||||| ||||||| |||||||||||    
T  49200330 ------ctcccaacgcatgtattttcgcacggacaactatacaatgttgtataaagagttgcatccagagaaggactgaagatattgattaataatgaag 49200237  T
Q  225 atggtgaagatat 237  Q
    || ||||||||||    
T  49200236 attgtgaagatat 49200224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 29968268 - 29968363
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatggtgaagata 236  Q
    |||||||||| || |||||||| ||||||||||| |||||||||||||||| ||||||||| ||||||||||| | | ||||||||||||||||||    
T  29968268 ctgtattttctcacggacaattgtatgttgttgtttcaagagttacatccaaagaaggactaaaaatattgatcactgatgaagatggtgaagata 29968363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 235
Target Start/End: Original strand, 33315490 - 33315690
Alignment:
Q  28 ttcaagttttaaagacgacagttccctttaattgtctcttttgccatgactattaacaagagtcaagggcaatcaatgcgacgtgttggattatatattt 127  Q
    ||||||||| ||||||||||||| ||||||  |||||| |||  | |||| |||||||||||  ||||| ||| | |||||| ||||||||||||| |||    
T  33315490 ttcaagtttcaaagacgacagtttcctttagctgtctcatttttcgtgacaattaacaagagctaagggaaattactgcgacatgttggattatatcttt 33315589  T
Q  128 atatctcccaatgtctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgataa-taatgaagat 226  Q
            ||| | |  |||||||||||||| |||||||| |||  ||||||||||||||||||||||||||   ||| |||||||||| ||||||||||    
T  33315590 --------caacgccaatattttcacatggagaattatatattgccgtctcaagagttacatccagagaagggtcgaagatattgataattaatgaagat 33315681  T
Q  227 ggtgaagat 235  Q
     ||||||||    
T  33315682 tgtgaagat 33315690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 47428160 - 47428065
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatggtgaagata 236  Q
    |||||||||  || ||||| || ||||||||||| |||||||||||||||| |||||||||  | |||||||| | | ||||||||||||||||||    
T  47428160 ctgtattttttcacggacagttgtatgttgttgtttcaagagttacatccaaagaaggactatagatattgatcactgatgaagatggtgaagata 47428065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 47966022 - 47965961
Alignment:
Q  178 caagagttacatccagagaaggactgaaaatattgataa-taatgaagatggtgaagatatt 238  Q
    ||||||||||||| ||||||| ||| || |||||||||| ||||||||||||||||||||||    
T  47966022 caagagttacatctagagaagaactaaagatattgataactaatgaagatggtgaagatatt 47965961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 2479417 - 2479322
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattga-taataatgaagatggtgaagata 236  Q
    |||||||||| || | ||| || ||||||  ||| ||||||||||||||||||||| |||| || ||||||| || | ||||||||||||||||||    
T  2479417 ctgtattttctcacgcacagttgtatgttactgtttcaagagttacatccagagaatgactaaagatattgattactgatgaagatggtgaagata 2479322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 41851252 - 41851158
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatggtgaagata 236  Q
    |||||||||| || ||||| || ||||||| ||| |||||||||||||| ||||||||||| || ||| |||| | | ||||||||||||||||||    
T  41851252 ctgtattttctcacggacagttgtatgttgatgtttcaagagttacatctagagaaggactaaagata-tgatcactgatgaagatggtgaagata 41851158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 18000658 - 18000598
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggact 202  Q
    ||||||||||  | ||||| || ||| ||| ||| ||||||||||||||||||||||||||    
T  18000658 ctgtattttcttacggacagttgtatattgctgtttcaagagttacatccagagaaggact 18000598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 126 - 235
Target Start/End: Complemental strand, 19510 - 19400
Alignment:
Q  126 ttatatctcccaatgtctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaag 224  Q
    |||||||||||||  |||||||||||||||||| | |||||| ||| | |||||||| ||||||||||||||  ||||||||||||||| ||||||||||    
T  19510 ttatatctcccaaaatctgtattttcacatggatagttatattttgctatctcaagaattacatccagagaaatactgaaaatattgataaataatgaag 19411  T
Q  225 atggtgaagat 235  Q
    |||||||||||    
T  19410 atggtgaagat 19400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 49 - 227
Target Start/End: Complemental strand, 43418662 - 43418491
Alignment:
Q  49 ttccctttaattgtctcttttgccatgactattaacaagagtcaagggcaatcaatgcgacgtgttggattatatatttatatctcccaatgtctgtatt 148  Q
    |||||||||  | |||| |||| |||||||||||||||||| |||||||||||| ||  || ||||||||| ||| ||        |  | || ||||||    
T  43418662 ttccctttagctttctcatttgtcatgactattaacaagagccaagggcaatcattgaaacatgttggattttatctt--------ctgacgtatgtatt 43418571  T
Q  149 ttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatg 227  Q
    |||||||| |||||||||||||| ||||||||||||||| |||||||||||| |||||||| |||| |||||||||||||    
T  43418570 ttcacatgaacaattatatgttgctgtctcaagagttacctccagagaaggattgaaaatactgataaataatgaagatg 43418491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 1852227 - 1852322
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattg-ataataatgaagatggtgaagata 236  Q
    |||||||||| |||||||| || ||||||||||| |||||||||||||| ||||||||||| || |||||| | | ||||||||||||||||||||    
T  1852227 ctgtattttctcatggacagttgtatgttgttgtttcaagagttacatcaagagaaggactaaagatattgaacactaatgaagatggtgaagata 1852322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 1199552 - 1199647
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatggtgaagata 236  Q
    |||||||||| || | ||| || ||||||| ||| |||||||||||||||||||||| ||| || |||||||| | | ||||||||||||||||||    
T  1199552 ctgtattttctcacgaacagttgtatgttgctgtttcaagagttacatccagagaagtactaaagatattgatcactgatgaagatggtgaagata 1199647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 15880858 - 15880807
Alignment:
Q  136 caatgtctgtattttcacatggacaattatatgttgttgtctcaagagttac 187  Q
    |||||||||||||||| ||||||||||| ||||||||||| |||||||||||    
T  15880858 caatgtctgtattttcgcatggacaattgtatgttgttgtatcaagagttac 15880807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 604250 - 604155
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatggtgaagata 236  Q
    ||||||||||  | ||||| || ||||||| ||| |||||||||||||||| ||||||| | || |||||||| | | ||||||||||||||||||    
T  604250 ctgtattttcttacggacagttgtatgttgctgtttcaagagttacatccaaagaaggattaaagatattgatcactgatgaagatggtgaagata 604155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 5241289 - 5241198
Alignment:
Q  147 ttttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgataa-taatgaagatggtgaagatatt 238  Q
    ||||||||||||||| ||||||||  ||| ||||||||| |||||||| |||||   || |||||||||| | || |||||||||||||||||    
T  5241289 ttttcacatggacaactatatgttactgtatcaagagttgcatccagaaaaggatcaaagatattgataactgat-aagatggtgaagatatt 5241198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 30437227 - 30437156
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattga 213  Q
    |||||||||| ||  |||| || ||||||| | | |||||||||||||||||||||||||| || |||||||    
T  30437227 ctgtattttctcacagacagttgtatgttgctatttcaagagttacatccagagaaggactaaagatattga 30437156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 1851110 - 1851176
Alignment:
Q  171 gttgtctcaagagttacatccagagaaggactgaaaatattgata-ataatgaagatggtgaagata 236  Q
    ||||| |||||||||||||| ||||||| ||| || |||||||||  | ||||||||||||||||||    
T  1851110 gttgtatcaagagttacatcaagagaagaactaaagatattgatatctgatgaagatggtgaagata 1851176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 44429580 - 44429673
Alignment:
Q  143 tgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatggtgaagata 236  Q
    ||||||||| || | |||||| ||||||||||| |||||||||||||||| | || |||| || |||||||| | | || |||||||||||||||    
T  44429580 tgtattttctcacgcacaattgtatgttgttgtttcaagagttacatcca-aaaaagactaaagatattgatcattgataaagatggtgaagata 44429673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 32721035 - 32721084
Alignment:
Q  149 ttcacatggacaattatatgttgttgtctcaagagttacatccagagaag 198  Q
    |||||| |||||||||||||| ||||| || ||||||||||||| |||||    
T  32721035 ttcacacggacaattatatgtggttgtttctagagttacatccatagaag 32721084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 44433316 - 44433365
Alignment:
Q  143 tgtattttcacatggacaattatatgttgttgtctcaagagttacatcca 192  Q
    ||||||||| || | |||||| ||||||||||| ||||||||||||||||    
T  44433316 tgtattttctcacgcacaattgtatgttgttgtttcaagagttacatcca 44433365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 16375822 - 16375727
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatggtgaagata 236  Q
    |||||||||| || |||||||| |||| |||||| |||||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||    
T  16375822 ctgtattttctcaaggacaattgtatgatgttgtttcaagagttacatccagagaaggactaaagatattgatcactgatgaagatggtgaagata 16375727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 45286465 - 45286560
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatggtgaagata 236  Q
    |||||||||| || ||||| || ||||||||||| |||||||||||||||||||||||||| || |||||||| | | ||||||||| ||||||||    
T  45286465 ctgtattttctcacggacagttgtatgttgttgtttcaagagttacatccagagaaggactaaagatattgatcactgatgaagatgatgaagata 45286560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 11642508 - 11642413
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatggtgaagata 236  Q
    |||||||||| || ||||| || ||||||| ||| |||||||||||||||||||||||||| || |||||||| | | ||||| ||||||||||||    
T  11642508 ctgtattttctcacggacagttgtatgttgctgtttcaagagttacatccagagaaggactaaatatattgatcactgatgaaaatggtgaagata 11642413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 9141375 - 9141280
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatggtgaagata 236  Q
    |||||||||| |||||||| || ||||||| ||| |||| ||||||||| ||||||||||| || |||||||| | | |||| |||||||||||||    
T  9141375 ctgtattttctcatggacatttctatgttgctgtttcaaaagttacatctagagaaggactaaagatattgatcattgatgatgatggtgaagata 9141280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 45418656 - 45418596
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggact 202  Q
    |||||||||| || ||||| || ||||||| ||| ||||||||||||||||| ||||||||    
T  45418656 ctgtattttctcacggacagttgtatgttgctgtttcaagagttacatccagcgaaggact 45418596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 48844452 - 48844403
Alignment:
Q  150 tcacatggacaattatatgttgttgtctcaagagttacatccagagaagg 199  Q
    ||||||||||||||| |||| ||||| || ||||||||||||||| ||||    
T  48844452 tcacatggacaattacatgtggttgtttctagagttacatccagacaagg 48844403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 881 - 771
Alignment:
Q  127 tatatctcccaatgtctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaaga 225  Q
    ||||||| ||||  ||||||||||| || |||||||| ||||||| ||| ||||||||||||||| ||||| |||| || |||||||| | | |||||||    
T  881 tatatctaccaacatctgtattttctcacggacaattgtatgttgctgtttcaagagttacatccggagaatgactaaagatattgatcactgatgaaga 782  T
Q  226 tggtgaagata 236  Q
    |||||||||||    
T  781 tggtgaagata 771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 9336 - 9446
Alignment:
Q  127 tatatctcccaatgtctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaaga 225  Q
    ||||||| ||||  ||||||||||| || |||||||| ||||||| ||| ||||||||||||||| ||||| |||| || |||||||| | | |||||||    
T  9336 tatatctaccaacatctgtattttctcacggacaattgtatgttgctgtttcaagagttacatccggagaatgactaaagatattgatcactgatgaaga 9435  T
Q  226 tggtgaagata 236  Q
    |||||||||||    
T  9436 tggtgaagata 9446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 29644 - 29534
Alignment:
Q  127 tatatctcccaatgtctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaaga 225  Q
    ||||||| ||||  ||||||||||| || |||||||| ||||||| ||| ||||||||||||||| ||||| |||| || |||||||| | | |||||||    
T  29644 tatatctaccaacatctgtattttctcacggacaattgtatgttgctgtttcaagagttacatccggagaatgactaaagatattgatcactgatgaaga 29545  T
Q  226 tggtgaagata 236  Q
    |||||||||||    
T  29544 tggtgaagata 29534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 31487388 - 31487296
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatggtgaag 233  Q
    |||||||||| || ||||| || ||||||||||| |||||||||||||||| ||||||||| || |||||||| | | |||||||||||||||    
T  31487388 ctgtattttctcacggacagttgtatgttgttgtttcaagagttacatccaaagaaggactaaagatattgatcactgatgaagatggtgaag 31487296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 19123205 - 19123300
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatggtgaagata 236  Q
    |||||||||| || ||||| || ||||||| ||| |||||||||| ||||||||||||||| || |||||||| | | ||||||||||||||||||    
T  19123205 ctgtattttctcacggacagttgtatgttgctgtttcaagagttatatccagagaaggactaaagatattgatcattgatgaagatggtgaagata 19123300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 14164591 - 14164496
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatggtgaagata 236  Q
    |||||||||| || ||||| || ||||||| ||| |||| ||||||||||||||||||||| || ||||||||   | ||||||||||||||||||    
T  14164591 ctgtattttctcacggacagttgtatgttgctgtttcaaaagttacatccagagaaggactaaagatattgatcgctgatgaagatggtgaagata 14164496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 31486373 - 31486278
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatggtgaagata 236  Q
    |||||||||| |  ||||| || ||||||| | | |||||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||    
T  31486373 ctgtattttctcgcggacagttgtatgttgctttttcaagagttacatccagagaaggactaaagatattgatcactgatgaagatggtgaagata 31486278  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 11298805 - 11298744
Alignment:
Q  178 caagagttacatccagagaaggactgaaaatattgataa-taatgaagatggtgaagatatt 238  Q
    ||||||||||||| ||||||||||| || |||||||||| ||||||||| ||||||||||||    
T  11298805 caagagttacatctagagaaggactaaagatattgataactaatgaagacggtgaagatatt 11298744  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 37340088 - 37340124
Alignment:
Q  180 agagttacatccagagaaggactgaaaatattgataa 216  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  37340088 agagttacatctagagaaggactgaagatattgataa 37340124  T

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Target: scaffold0013 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 104681 - 104776
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatggtgaagata 236  Q
    |||||||||| || ||||| || |||||| |||| |||||||| ||||||||||||||||| || |||||||| | | ||||||||||||||||||    
T  104681 ctgtattttctcacggacagttgtatgttattgtttcaagagtaacatccagagaaggactaaagatattgatcactgatgaagatggtgaagata 104776  T

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Target: scaffold0013; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 127353 - 127425
Alignment:
Q  165 tatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatggtgaagata 236  Q
    |||||| |||| |||||||| ||||||||||||||||| || |||||||| | | | ||||||||||||||||    
T  127353 tatgttattgtttcaagagtaacatccagagaaggactaaagatattgatcactgacgaagatggtgaagata 127425  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 1394066 - 1394158
Alignment:
Q  145 tattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatggtgaagata 236  Q
    ||||||| || ||||| || |||||| |||| |||||||||||||| ||||||||||| || |||||||| | | ||||||||||||||||||    
T  1394066 tattttctcacggacagttgtatgttattgtttcaagagttacatctagagaaggactaaatatattgatcactgatgaagatggtgaagata 1394158  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 7018394 - 7018481
Alignment:
Q  150 tcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgataa-taatgaagatggtgaagata 236  Q
    ||||||||||||||| |||| ||||| || | |||||||||||||||| |  |||| ||| |||||| | ||||||||||||||||||    
T  7018394 tcacatggacaattacatgtggttgtttccaaagttacatccagagaatggttgaagatactgataattgatgaagatggtgaagata 7018481  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 15298163 - 15298222
Alignment:
Q  180 agagttacatccagagaaggactgaaaatattga-taataatgaagatggtgaagatatt 238  Q
    ||||||||||| |||||||||||||| ||||||| || | ||||||||||||||||||||    
T  15298163 agagttacatctagagaaggactgaatatattgattacttatgaagatggtgaagatatt 15298222  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 95
Target Start/End: Complemental strand, 23307376 - 23307348
Alignment:
Q  67 tttgccatgactattaacaagagtcaagg 95  Q
    |||||||||||||||||||||||||||||    
T  23307376 tttgccatgactattaacaagagtcaagg 23307348  T

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Target: scaffold0059 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 71384 - 71289
Alignment:
Q  142 ctgtattttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaatattgat-aataatgaagatggtgaagata 236  Q
    |||||||||| || ||||| || |||||| |||| |||||||| |||||||||||| |||| || |||||||| | | ||||||||||||||||||    
T  71384 ctgtattttctcacggacagttgtatgttattgtttcaagagtaacatccagagaaagactaaagatattgatcactgatgaagatggtgaagata 71289  T

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Target: scaffold0121 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 25534 - 25595
Alignment:
Q  147 ttttcacatggacaattatatgttgttgtctcaagagttacatccagagaaggactgaaaat 208  Q
    ||||||||||| |||||||||||||   | ||||||||||| |||||||| ||| |||||||    
T  25534 ttttcacatggtcaattatatgttgcaatatcaagagttacctccagagatggattgaaaat 25595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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