View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15961_low_2 (Length: 594)
Name: NF15961_low_2
Description: NF15961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15961_low_2 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 19 - 594
Target Start/End: Original strand, 15201544 - 15202122
Alignment:
| Q |
19 |
agacgttaatggcttctggaattagattcagttctcccactttggcttcagctatggttgatattgtccctgcttttaccttcatacttgctataatttc |
118 |
Q |
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| T |
15201544 |
agacgttaatggcttctggaattagattcagttctcctactttggcttcagctatggttgatattgtccctgcttttaccttcatacttgctataatttc |
15201643 |
T |
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| Q |
119 |
aaggtatgttatttttattttatggttgaaattacaaggtttgttgttttttggattaaaatgcgattaattgcatcataaagtcagcaacaaagaata- |
217 |
Q |
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| T |
15201644 |
aaggtatgttatttttattttatggttgaaattacaaggtttgttgttttttggattaaaatgcaattaattgcatcataaagtcagcaacaaagaatac |
15201743 |
T |
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| Q |
218 |
---tattttatacaannnnnnnggattattattattgattaatggcggtatccggattaattaaatttagggagaaaaagttatagttgctttatgccta |
314 |
Q |
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| T |
15201744 |
tcctattttatacaatttttttggattattattattgattaatggcggtatccagattaattaaatttaaggagaaaaagttatagtggctttatgccta |
15201843 |
T |
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| Q |
315 |
tctcttttatattagttcctctaannnnnnnctcttaatataaattaaaatacaataaaattatagataggctactctctcggtgggtagcatgtctttt |
414 |
Q |
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| T |
15201844 |
tctcttttatattagttcctctaa-ttttttctcttgatataaattaaaatacaataaaattatcgataggctactctctcggtgggtagcatgtctttt |
15201942 |
T |
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| Q |
415 |
ctcgattggtactgagtagagttgtattgtactcttctattaatttcaagttaattttcttggttgtgggacatcnnnnnnnaaagttgaattaattaac |
514 |
Q |
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| T |
15201943 |
ctcgattggtactgagtagagttgtattgtactcttctattaatttctagttaattttcttggttgtgggacatctttttttaaagttgaattaattaac |
15202042 |
T |
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| Q |
515 |
ctttgtactactttctagtttctttggctgtggcctgttggacatctcttcttcaattcggcaagaattatctacccacc |
594 |
Q |
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| T |
15202043 |
ctttgcactactttctagtttctttggctgtggcctgtgggacatctcttcttcaattcggcaagaaatattttcccacc |
15202122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 15208491 - 15208692
Alignment:
| Q |
19 |
agacgttaatggcttctggaattagattcagttctcccactttggcttcagctatggttgatattgtccctgcttttaccttcatacttgctataatttc |
118 |
Q |
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| T |
15208491 |
agacgttaatgacttctggaattaaattcagttctcctgcgttggcttcagctattgttaatcttgtccctgcttttaccttcatacttgctataatttc |
15208590 |
T |
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| Q |
119 |
aaggtatgttatttttattttatggttgaaattacaaggtttgtt-gttttttggattaaaatgcgattaattgcatcataaagtcagcaacaaagaata |
217 |
Q |
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| T |
15208591 |
aaggtatgttgtttttattttatggtttaaattacaaggtttgttctttttttggattagaatgcatttacttgcatcataaagtcagcaacataaaata |
15208690 |
T |
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| Q |
218 |
ta |
219 |
Q |
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| T |
15208691 |
ta |
15208692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 15189598 - 15189687
Alignment:
| Q |
34 |
ctggaattagattcagttctcccactttggcttcagctatggttgatattgtccctgcttttaccttcatacttgctataatttcaaggt |
123 |
Q |
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| T |
15189598 |
ctggaattggatatagctctcccacattggcatctgctatggttgaccttgtccctgctttcacgttcatacttgctgtaatttcaaggt |
15189687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 15179973 - 15180011
Alignment:
| Q |
85 |
tccctgcttttaccttcatacttgctataatttcaaggt |
123 |
Q |
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| T |
15179973 |
tccctgcttttaccttcatacttgctttaatttcaaggt |
15180011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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