View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15961_low_5 (Length: 357)
Name: NF15961_low_5
Description: NF15961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15961_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 357
Target Start/End: Complemental strand, 41705745 - 41705406
Alignment:
| Q |
17 |
tcgaaggttgaaattgatatatagtaaagtgttgattcgtggtcggaggtgatcgcaatgcattgctgcggttagaaggatgactaaagtggtggtggtc |
116 |
Q |
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| T |
41705745 |
tcgaaggtggaaattgatatatagtaaagtgttgattcgtagtcggaggtgatcgcaatgcattgctgcggttagaaggatgactaaagtggtggtggtc |
41705646 |
T |
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| Q |
117 |
atatgaagttgaagaggatgttaaaacaaaagcaataattattaaactatttttggcatttgagatttaagtgnnnnnnnnnnnnnnnnnnnnnnntcaa |
216 |
Q |
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| T |
41705645 |
atatgaaattgaagaggatgttaaaacaaaagcaatagttattaaactatttttggcatttgagatttaagtgaaaaatattttaaaattaaaaaatcaa |
41705546 |
T |
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| Q |
217 |
ttcaacattattttgttagaacaatattgtttttaaatcaaaaatcagaaattaacaaccaccccaaataaccttaagatagtaacaaataaataaaaaa |
316 |
Q |
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| T |
41705545 |
ttcaacattattttgttagaacaatattgtttttaaatcaaaaaccagaaattaacaaccaccccaaataa-cttaagatagtaacaaataaaaaaaaaa |
41705447 |
T |
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| Q |
317 |
ccttaaagttatatttattttatgaagttgagttatatcca |
357 |
Q |
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| T |
41705446 |
ccttaaagttatatttattttatgaagttgagttatatcca |
41705406 |
T |
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