View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_high_1 (Length: 679)
Name: NF15962_high_1
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 322 - 661
Target Start/End: Original strand, 1329719 - 1330058
Alignment:
| Q |
322 |
ttgtgcaaaccgagggtgatttgttgaacttaggagatgatagagtgacaactgaagaacatggggacaaacttgccttagctttatttgatggggctgc |
421 |
Q |
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| T |
1329719 |
ttgtgcaaaccgagggtgatttgttgaacttaggagatgatagagtgacaactgaagaacatggggacaaactagccttagctttatttgatggggctgc |
1329818 |
T |
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| Q |
422 |
accagcaacaagtgaaggtggaataaaagcacttccatggcatgcatttgacgagagtgcagattgggaaacagcgttggtacaatcaaccagccactta |
521 |
Q |
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| T |
1329819 |
accagcaacaagtgaaggtggaataaaagcacttccatggcatgcatttgatgagagtgcagattgggaaacagcgttggtacaatcaaccagccactta |
1329918 |
T |
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| Q |
522 |
ggaaaccagcagcctgcattaggtggaggctttgatacattattgttggatggtatgtataaacaaggagaaatgaatgcagccatgcaaggagtgggat |
621 |
Q |
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| T |
1329919 |
ggaaaccagcagcctgcattaggtggaggctttgatacattattgttggatggtatgtataaacaaggagaaatgaatgcagccatgcaaggagtgggat |
1330018 |
T |
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| Q |
622 |
atggttgcagtggaagtgctagcagtgtagcacttggttc |
661 |
Q |
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| T |
1330019 |
atggtggcagtggaagtgctagcagtgtagcacttggttc |
1330058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 36 - 272
Target Start/End: Original strand, 1329433 - 1329669
Alignment:
| Q |
36 |
aagaatattggaatttgtcgctcttctgagtaccctgagatagataaggtcacaccaaagaagttagaggttatggaagagtttatcaaagataagaaca |
135 |
Q |
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| T |
1329433 |
aagaatattggaatttgtcgctcttctgagtaccctgagatagataaggtcacaccaaagaagttagaggttatggaagagtttatcaaagataagaaca |
1329532 |
T |
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| Q |
136 |
tgctagcacaaagcaataaagctgatgttcaagaagagaacaattcggatgaagaagccaaggaacccgaacccgaacctgaaccggaagaggatatgaa |
235 |
Q |
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| T |
1329533 |
tgctagcacaaagcaataaagctgatgttcaagaagagaacaattcggatgaagaagccaaggaacccgaacccgaacctgaaccggaagaggatatgaa |
1329632 |
T |
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| Q |
236 |
tgaagtcaaggcccttccaccaccagaggaaccagcc |
272 |
Q |
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| T |
1329633 |
tgcagtcaaggcccttccaccaccagaggaaccagcc |
1329669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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