View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_high_104 (Length: 259)
Name: NF15962_high_104
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_high_104 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 13145351 - 13145592
Alignment:
| Q |
1 |
ctgtttattattaggattaaatactccaaaatgtttctccaactcaggattcttcttattctcatcaaacaatccaaatatataagtctcaataggtcca |
100 |
Q |
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| T |
13145351 |
ctgtttattattaggattaaatactccaaaatgtttctccaactcaggattcttcttattctcatcaaacaacccaaatatataagtctcaataggtcca |
13145450 |
T |
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| Q |
101 |
gacctcattggtgttccaccattaacatgcctaatcaaattatcaagataaactcttgcattatcataagtagctgcaaattcaccatctgaaggccaac |
200 |
Q |
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| T |
13145451 |
gacctcattggtgttccaccattaacatgcctaatcaaattatcaagataaactcttgcattatcataagtagctgcaaatccaccatctgaaggccaac |
13145550 |
T |
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| Q |
201 |
cactttccgacacaacaaccttaacaaaaccaattccagtat |
242 |
Q |
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| T |
13145551 |
cactctcagacacaacaaccttaacaaaaccaattccagtat |
13145592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 13152122 - 13152356
Alignment:
| Q |
8 |
ttattaggattaaatactccaaaatgtttctccaactcaggattcttcttattctcatcaaacaatccaaatatataagtctcaataggtccagacctca |
107 |
Q |
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| T |
13152122 |
ttattaggataaaacactccaaaatgtttctctaactcaggattcttctgattctcatcaaacaatccaaatatataagtctcaataggtccagacctca |
13152221 |
T |
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| Q |
108 |
ttggtgttccaccattaacatgcctaatcaaattatcaagataaactcttgcattatcataagtagctgcaaattcaccatctgaaggccaaccactttc |
207 |
Q |
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| T |
13152222 |
ttggtgtcccacctttaacatgcctaatcaaattatcaagataaactcttgcattatcataagtagttgcaaatccaccatctgaaggccaaccactctc |
13152321 |
T |
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| Q |
208 |
cgacacaacaaccttaacaaaaccaattccagtat |
242 |
Q |
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| T |
13152322 |
agacacaacaaccttaacaaaaccaattccagtat |
13152356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 13161116 - 13161053
Alignment:
| Q |
8 |
ttattaggattaaatactccaaaatgtttctccaactcaggattcttcttattctcatcaaaca |
71 |
Q |
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|||||||||| ||| |||||||||||||||||||| || ||| |||| | ||||||||||||| |
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| T |
13161116 |
ttattaggataaaacactccaaaatgtttctccaattctggactcttttggttctcatcaaaca |
13161053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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