View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_high_111 (Length: 250)
Name: NF15962_high_111
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_high_111 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 18231857 - 18231625
Alignment:
| Q |
18 |
tggacaagcaaaaacagtaacaagcttatgatatttattccaaaaaccattgaatattagttcaaaaatctcatttccttggtctttaattcaccttgtt |
117 |
Q |
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| T |
18231857 |
tggacaagcaaaaacagtaacaagcttatgatatttattccaaaaaccattggatattagttcaaaaatctcatttccttggtcttcaattcaccttgtt |
18231758 |
T |
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| Q |
118 |
atttatcctatctcatata-aaaatatgcacatcaaagatatttactcaacaaagaaatcacattctgaacaaaaatgcagcttagcataatgcaattgc |
216 |
Q |
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| T |
18231757 |
atttatcctatctcatataaaaaatatgcacatcaaagatatttactcaacaaagaaatcacattctgaacaaaaatgcagcttagcataatgcaattgc |
18231658 |
T |
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| Q |
217 |
acgagcctacgatctatttcagaaacattttgga |
250 |
Q |
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| T |
18231657 |
a-tagcctacgatctatttcagtaacattttgga |
18231625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 171
Target Start/End: Complemental strand, 18189206 - 18189096
Alignment:
| Q |
59 |
aaaaaccattgaatattagttcaaaaatctcatttccttggtctttaattcaccttgttatttatcctatctcatataaa-aatatgcacatcaaagata |
157 |
Q |
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| T |
18189206 |
aaaaaacattggatttcagtccaaaaatctcctttcctttgtct---attcatcttgttatttatcctgtctcatttacataatatgtacaacaaagata |
18189110 |
T |
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| Q |
158 |
tttactcaacaaag |
171 |
Q |
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| T |
18189109 |
tttactcaacaaag |
18189096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 18198992 - 18198931
Alignment:
| Q |
111 |
ccttgttatttatcctatctcatataaa-aatatgcacatcaaagatatttactcaacaaag |
171 |
Q |
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| T |
18198992 |
ccttgttatttatcctgtctcatttacataatatgtgcatcaaagatatttactcaacaaag |
18198931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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