View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_high_12 (Length: 499)
Name: NF15962_high_12
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 134 - 485
Target Start/End: Original strand, 16951169 - 16951520
Alignment:
| Q |
134 |
tcattatattatgagcgttcaactgacatcctttaagctgaactttatggcattcatcgaaggcttatagctcttgcgaaggagatgtgtctcgattatt |
233 |
Q |
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| T |
16951169 |
tcattatattatgagcgttcaactgacatcctttaagctgaactttatggcattcatcgaaggcttatagctcttgcgaaggagatgtgtctcgattatt |
16951268 |
T |
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| Q |
234 |
caatgttgttgcatcaactccttccccggtctaaatcttattgacttgctatctaacagctttcataagcatgtacattgttgattcaagacatcaaaga |
333 |
Q |
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| T |
16951269 |
caatgttgttgcatcaacttcttcccctgtctaaatcttattgacttgctatctaacggttttcataagcatgtacgttgttgattcaagacatcaaaga |
16951368 |
T |
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| Q |
334 |
cattttacgcgagaattgcctcttccgtatcatccacactctctataaaggcattcaaagagctgatttcatggtcggtgtttcttccggccctgatcta |
433 |
Q |
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| T |
16951369 |
cattttacgcgagaattgcctcttccgtatcatccacactctctataaaggcattcaaagagctgatttcatggtcgttgtttcttccggccctgatcta |
16951468 |
T |
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| Q |
434 |
ttggttcacgcttctcttcctccggatcttaaggacatccttgtagcggatg |
485 |
Q |
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| T |
16951469 |
ttggttcacgcttctcttcctccggatcttaaggacatccttgtagcggatg |
16951520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 358
Target Start/End: Complemental strand, 45314105 - 45314059
Alignment:
| Q |
312 |
tgttgattcaagacatcaaagacattttacgcgagaattgcctcttc |
358 |
Q |
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| T |
45314105 |
tgttgattcaagacatcaaagacttgttacgtgagaattgtctcttc |
45314059 |
T |
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