View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_high_132 (Length: 231)
Name: NF15962_high_132
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_high_132 |
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Alignment Details
Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 14331668 - 14331474
Alignment:
| Q |
16 |
atgaacatgctctaactctaaaaatatatatggtttgatcttaatgagcaacagaatgtcaaaagactactacaatgttttatatcatttaggaataatc |
115 |
Q |
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| T |
14331668 |
atgaacatgctctaactctaaaaatatatatggtttgatcttaatgagcaatagaatgtcaaaatactactacaatgtgttatatcatttgggaataatc |
14331569 |
T |
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| Q |
116 |
atacatgaatataaagaaaatgtaaaagcataacattaggaattgaagnnnnnnnnnngagaagaacaaacttggtaagctgaagttgatacaccaaa |
213 |
Q |
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| T |
14331568 |
atacatgaataaaaagaaaatgcaaaagcataacattaggaattgaa---caaaaagagagaagaacaaacttggtaagctgaagttgatacaccaaa |
14331474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 21725571 - 21725377
Alignment:
| Q |
16 |
atgaacatgctctaactctaaaaatatatatggtttgatcttaatgagcaacagaatgtcaaaagactactacaatgttttatatcatttaggaataatc |
115 |
Q |
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| T |
21725571 |
atgaacatgctataactctaaaaatatatatggtttgatcttaatgagcaacataatgtcaaaatactactacaatgtgttatatcatttgggaataatc |
21725472 |
T |
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| Q |
116 |
atacatgaatataaagaaaatgtaaaagcataacattaggaattgaagnnnnnnnnnngagaagaacaaacttggtaagctgaagttgatacaccaaa |
213 |
Q |
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| T |
21725471 |
atacatgaatataaagaaaatgcaaaagcataacattaggaattgaa---aaaagagagagaagaacaaacttggtaagctgaagttgatacaccaaa |
21725377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 21805296 - 21805102
Alignment:
| Q |
16 |
atgaacatgctctaactctaaaaatatatatggtttgatcttaatgagcaacagaatgtcaaaagactactacaatgttttatatcatttaggaataatc |
115 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||| ||||||||| |
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| T |
21805296 |
atgaacatgctataactctaaaaatatatatggtttgatcttaatgagcaacataatgtcaaaatactactacaatgtgttatatcatttgggaataatc |
21805197 |
T |
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| Q |
116 |
atacatgaatataaagaaaatgtaaaagcataacattaggaattgaagnnnnnnnnnngagaagaacaaacttggtaagctgaagttgatacaccaaa |
213 |
Q |
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| T |
21805196 |
atacatgaatataaagaaaatgcaaaagcataacattaggaattgaa---aaaagagagagaagaacaaacttggtaagctgaagttgatacaccaaa |
21805102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 9988700 - 9988510
Alignment:
| Q |
20 |
acatgctctaactctaaaaatatatatggtttgatcttaatgagcaacagaatgtcaaaagactactacaatgttttatatcatttaggaataatcatac |
119 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||||| |
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| T |
9988700 |
acatgctctaactctaaaagtatatatggtttgatcttaatgagcaacagaatgtcaaaagtctagtacaatgtgttatatcatttgggaataatcatac |
9988601 |
T |
|
| Q |
120 |
atgaatataaagaaaatgtaaaagcataacattaggaattgaagnnnnnnnnnngagaagaacaaacttggtaagctgaagttgatacaccaaa |
213 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||| |
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| T |
9988600 |
atgaatataaagaaaatgcaaaagcataacattaggaattgaa---aaaaaagatagaagaacaaaattggtaagctgaagttgatacaacaaa |
9988510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 37 - 213
Target Start/End: Original strand, 25330392 - 25330570
Alignment:
| Q |
37 |
aaatatatatggtttgatcttaatgagcaacagaatgtcaaaagactactacaatgttttatatcatttaggaataatcatacatgaatataaagaaaat |
136 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| || ||||| |||||| |||| |||||||||||||||||||||||||||||| |
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| T |
25330392 |
aaatatatatggtttgatcttaatgagcaacagaatgtcaagagactaatagaatgtgttatattatttgggaataatcatacatgaatataaagaaaat |
25330491 |
T |
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| Q |
137 |
gtaaaagcataacattaggaattg--aagnnnnnnnnnngagaagaacaaacttggtaagctgaagttgatacaccaaa |
213 |
Q |
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| T |
25330492 |
gcaaaagcataacattaggaaatgaaaaaaaaacagagagagaagaacaaacttggtaagctgaagttgatacaccaaa |
25330570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 25325205 - 25325241
Alignment:
| Q |
177 |
aagaacaaacttggtaagctgaagttgatacaccaaa |
213 |
Q |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
25325205 |
aagaacaaacttggtaagctgaagttgaagcaccaaa |
25325241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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