View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_high_145 (Length: 204)
Name: NF15962_high_145
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_high_145 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 39100484 - 39100672
Alignment:
| Q |
1 |
cttttggtacaagaaaacttgtctatgctgatcacacggcttcaggtcgcagtcttcatttcattgaaaacttcatcaccaaacatcttctgcccttcta |
100 |
Q |
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| T |
39100484 |
cttttggtactagaaaacttgtctattctgatcacacagcttcaggtcgcagtcttcatttcattgaaaacttcatcaccaaacatcttctgcccttcta |
39100583 |
T |
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| Q |
101 |
cggtattgacatatttggcttttattttttctgttacactttgacatatttggtttaatttgtttgttataggtataggagtagtttat |
189 |
Q |
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| T |
39100584 |
cggtattgacatatttgtgttttattttttctgttacactttgacatatttggtttaatttgtttgttataggtataggagtagtttat |
39100672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 39109422 - 39109515
Alignment:
| Q |
13 |
gaaaacttgtctatgctgatcacacggcttcaggtcgcagtcttcatttcattgaaaacttcatcaccaaacatcttctgcccttctacggtat |
106 |
Q |
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||||||||||||||||||||||||| ||||| ||||| ||||||| || || |||| | ||||||| ||| || ||||| || ||||| ||||| |
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| T |
39109422 |
gaaaacttgtctatgctgatcacactgcttctggtcgtagtcttcgttacaatgaagatttcatcatcaatcaccttcttcctttctatggtat |
39109515 |
T |
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