View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15962_high_2 (Length: 600)
Name: NF15962_high_2
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 186 - 582
Target Start/End: Original strand, 25031889 - 25032285
Alignment:
| Q |
186 |
tatgttggcatggttatcacattatcacttccctccaaaaatacgtactgattggttccagtcccatccctctctggtaaatctacctctcctcttcacc |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25031889 |
tatgttggcatggttatcacattatcacttccctccaaaaatacgtactgattggttccagtcccatccctctctggtaaatctacctctcctcttcacc |
25031988 |
T |
|
| Q |
286 |
cttcaacatacccaatagccaccatgtattgtttgcattaaccccacatgcataatgcatttgttttcttattagttaatacacagcttctaggaagctt |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25031989 |
cttcaacatacccaatagccaccatgtattgtttgcattaaccccacatgcataatgcatttgttttcttattagttaatacacagcttctaggaagctt |
25032088 |
T |
|
| Q |
386 |
cctactttcccttcaaatataacttcatcccaacatgatatttatgtcaccctttgccaatctatgcaagtaacttgtttttgcttatacaagacacatg |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25032089 |
cctactttcccttcaaatataacttcatcccaacatgatatttatgtcaccctttgccaatctatgcaagtaacttgtttttgcttatacaagacacatg |
25032188 |
T |
|
| Q |
486 |
tcacattcaacaatataatatattgtttgaaatttaatgtgcatacactgatagtgtagtataaatcagtttaaacaatgtcataatacaaggatac |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25032189 |
tcacattcaacaatataatatattgtttgaaatttaatgtgcatacactgatagtgtagtataaatcagtttaaacaatgtcataatacaaggatac |
25032285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 25027186 - 25027357
Alignment:
| Q |
21 |
ttcattattagttttgtcatatgcataagtctaactgtcatataattactcatcacctatagggatcacatggttgaagtagcaacaagctgattcactc |
120 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
25027186 |
ttcattattacttttgtcacatgcataagtctaactgtcatataggt-ctcatcacctatagggatcacatggttgaagtagcaacaagctgattcac-c |
25027283 |
T |
|
| Q |
121 |
tttgttttgttcaaaatgaatgagaagtgagaattcagaattcccaaaatgttcaaaactctcaatatgttggc |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25027284 |
tttgttttgttcaaaatgaatgagaagtgagaattcagaattcccaaaatgttcaaaactctcaatatgttggc |
25027357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University