View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_high_20 (Length: 461)

Name: NF15962_high_20
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_high_20
NF15962_high_20
[»] chr7 (6 HSPs)
chr7 (15-442)||(46629676-46630103)
chr7 (29-440)||(46637512-46637923)
chr7 (39-441)||(46618816-46619218)
chr7 (31-440)||(46642886-46643292)
chr7 (138-440)||(46176265-46176561)
chr7 (54-95)||(46176561-46176602)
[»] chr1 (1 HSPs)
chr1 (29-442)||(15769302-15769709)
[»] chr3 (1 HSPs)
chr3 (197-442)||(18375981-18376226)


Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 15 - 442
Target Start/End: Original strand, 46629676 - 46630103
Alignment:
Q  15 gaagaacagtcggacgttttcagcaccaacttgcaaatctttgtcttctcttggaccgagtgatatattacaatctttgacaggaggatttcggctgagc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46629676 gaagaacagtcggacgttttcagcaccaacttgcaaatctttgtcttctcttggaccgagtgatatattacaatctttgacaggaggatttcggctgagc 46629775  T
Q  115 aaaaccaaaaataatgaactcttctgggaagctgtttggccgcgcttactagcaagaggatggcactctgagcaaacaaagtatcgaggatgtgttacct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46629776 aaaaccaaaaataatgaactcttctgggaagctgtttggccgcgcttactagcaagaggatggcactctgagcaaacaaagtatcgaggatgtgttacct 46629875  T
Q  215 ccgatgattatctggtttttcttattcctggtgttcagaagttttcaaggagaaaactagtgaaaggtaaccattactttgattcagttagcgatgtctt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46629876 ccgatgattatctggtttttcttattcctggtgttcagaagttttcaaggagaaaactagtgaaaggtaaccattactttgattcagttagcgatgtctt 46629975  T
Q  315 gaaaaaagtagtagctgaaccgaatattctcgtccttaaagaagaagaagctgctaaagtcggtagctgcaatgaggaagagctagaaaagagatcaaat 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46629976 gaaaaaagtagtagctgaaccgaatattctcgtccttaaagaagaagaagctgctaaagtcggtagctgcaatgaggaagagctagaaaagagatcaaat 46630075  T
Q  415 ggacatgatttatctgacgatcatcgcc 442  Q
    ||||||||||||||||||||||||||||    
T  46630076 ggacatgatttatctgacgatcatcgcc 46630103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 29 - 440
Target Start/End: Original strand, 46637512 - 46637923
Alignment:
Q  29 cgttttcagcaccaacttgcaaatctttgtcttctcttggaccgagtgatatattacaatctttgacaggaggatttcggctgagcaaaaccaaaaataa 128  Q
    ||||| |||||||| |||||||||||||||||||||||||||  ||||| ||| | |||| ||||||||||   |||||||||||||||||||||| |||    
T  46637512 cgtttccagcaccagcttgcaaatctttgtcttctcttggacttagtgagataattcaatatttgacagga---tttcggctgagcaaaaccaaaagtaa 46637608  T
Q  129 tgaactcttctgggaagctgtttggccgcgcttactagcaagaggatggcactctgagcaaacaaagtatcgaggatgtgttacctccgatgattatctg 228  Q
    ||| ||||||||||||||||||||||| ||||| || | |||||| ||||||||||||||| ||||||||||||| | |||||||||| ||||| |||||    
T  46637609 tgatctcttctgggaagctgtttggccccgcttgctgggaagaggttggcactctgagcaaccaaagtatcgaggctatgttacctccaatgataatctg 46637708  T
Q  229 gtttttcttattcctggtgttcagaagttttcaaggagaaaactagtgaaaggtaaccattactttgattcagttagcgatgtcttgaaaaaagtagtag 328  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||| ||||| |||||||||| ||||||||| |    
T  46637709 gtttttcttattcctggtgttgagaagttttcaaggagaaaacttgtgaaaggtgaccattactttgattctgttagtgatgtcttgagaaaagtagttg 46637808  T
Q  329 ctgaaccgaatattctcgtcctta---aagaagaagaagctgctaaagtcggtagctgcaatgaggaagagctagaaaagagatcaaatggacatgattt 425  Q
    ||||||||||||||||| | || |   ||||||||||||  || ||||| |||||||||||||||||||||| ||||||  ||||||||| | |||||||    
T  46637809 ctgaaccgaatattctcctgctcaaagaagaagaagaagaagccaaagttggtagctgcaatgaggaagagccagaaaatggatcaaatgaagatgattt 46637908  T
Q  426 atctgacgatcatcg 440  Q
     ||||||||||||||    
T  46637909 gtctgacgatcatcg 46637923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 39 - 441
Target Start/End: Original strand, 46618816 - 46619218
Alignment:
Q  39 accaacttgcaaatctttgtcttctcttggaccgagtgatatattacaatctttgacaggaggatttcggctgagcaaaaccaaaaataatgaactcttc 138  Q
    |||| |||||||| ||||||||||||||||||| ||||| ||| | |||| ||||||||||   |||||||||||||||||||||| |||||| ||||||    
T  46618816 accagcttgcaaagctttgtcttctcttggacctagtgagataattcaatatttgacagga---tttcggctgagcaaaaccaaaagtaatgatctcttc 46618912  T
Q  139 tgggaagctgtttggccgcgcttactagcaagaggatggcactctgagcaaacaaagtatcgaggatgtgttacctccgatgattatctggtttttctta 238  Q
    ||||| ||||||||||| |||||||| |||||||| ||||||||||||||| ||||||||||| | | |||||| ||| |||||||||||||||||||||    
T  46618913 tgggaggctgtttggccccgcttactggcaagaggttggcactctgagcaaccaaagtatcgatgctatgttacttccaatgattatctggtttttctta 46619012  T
Q  239 ttcctggtgttcagaagttttcaaggagaaaactagtgaaaggtaaccattactttgattcagttagcgatgtcttgaaaaaagtagtagctgaaccgaa 338  Q
    |||| |||||| |||||||||| ||||||||||| ||||||||| |||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||    
T  46619013 ttcccggtgttgagaagttttcgaggagaaaacttgtgaaaggtgaccattactttgattctgttagtgatgtcttgagaaaagtagttgctgaaccgaa 46619112  T
Q  339 tattctcgtccttaaagaagaaga---agctgctaaagtcggtagctgcaatgaggaagagctagaaaagagatcaaatggacatgatttatctgacgat 435  Q
    ||||||||| || |||||||||||   ||  || ||| | |||||||||||||||||||| |  |||||  ||||||||| | ||||| | ||| | |||    
T  46619113 tattctcgtgctcaaagaagaagaaggagaagccaaatttggtagctgcaatgaggaagatcccgaaaatggatcaaatgaagatgatctgtctaaggat 46619212  T
Q  436 catcgc 441  Q
    ||||||    
T  46619213 catcgc 46619218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 31 - 440
Target Start/End: Complemental strand, 46643292 - 46642886
Alignment:
Q  31 ttttcagcaccaacttgcaaatctttgtcttctcttggaccgagtgatatattacaatctttgacaggaggatttcggctgagcaaaaccaaaaataatg 130  Q
    |||||||||| |||||||||| || |||||||| ||||||| ||||||||| | ||||| |||||||||||||||| ||||||||||||||||| | | |    
T  46643292 ttttcagcacaaacttgcaaagctctgtcttcttttggacctagtgatataattcaatccttgacaggaggatttcagctgagcaaaaccaaaagtgacg 46643193  T
Q  131 aactcttctgggaagctgtttggccgcgcttactagcaagaggatggcactctgagcaaacaaagtatcgaggatgtgttacctccgatgattatctggt 230  Q
    | ||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||| ||| ||||| ||| | |||||||||| | |||||||||||    
T  46643192 atctcttctgggaagctgtttggcctcgattactggcaagaggttggcactctgagcaaccaatgtatcaaggctatgttacctccaaagattatctggt 46643093  T
Q  231 ttttcttattcctggtgttcagaagttttcaaggagaaaactagtgaaaggtaaccattactttgattcagttagcgatgtcttgaaaaaagtagtagct 330  Q
     |||||||||||||||||| | |||||||| ||||||||||| ||||||||| | |||||||||||||| ||||||||||||||||| ||||| ||||||    
T  46643092 ctttcttattcctggtgttgataagttttcgaggagaaaacttgtgaaaggtgatcattactttgattctgttagcgatgtcttgaacaaagtggtagct 46642993  T
Q  331 gaaccgaatattctcgtccttaaagaagaagaagctgctaaagtcggtagctgcaatgaggaagagctagaaaagagatcaaatggacatgatttatctg 430  Q
    |||||||||||||| |  ||| |||| ||||||    |||||||    ||||||||||||||| ||| ||||||| || |||||| | |||||||||| |    
T  46642992 gaaccgaatattcttgagcttgaagaggaagaa---tctaaagttcacagctgcaatgaggaacagccagaaaagggaacaaatgaagatgatttatcgg 46642896  T
Q  431 acgatcatcg 440  Q
    | ||||||||    
T  46642895 atgatcatcg 46642886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 138 - 440
Target Start/End: Complemental strand, 46176561 - 46176265
Alignment:
Q  138 ctgggaagctgtttggccgcgcttactagcaagaggatggcactctgagcaaacaaagtatcgaggatgtgttacctccgatgattatctggtttttctt 237  Q
    |||||||||||||||||| |||||  | |||||||| ||||||||||||||| ||||||||||||| | | |||||||| | |||||| ||||||||||     
T  46176561 ctgggaagctgtttggccccgcttgttggcaagaggttggcactctgagcaaccaaagtatcgaggctatcttacctcccaagattatttggtttttctc 46176462  T
Q  238 attcctggtgttcagaagttttcaaggagaaaactagtgaaaggtaaccattactttgattcagttagcgatgtcttgaaaaaagtagtagctgaaccga 337  Q
    |||||||||||| |||||||||||||||||||||| ||||||||| | |||||||||||||  ||||| ||||||||||  ||||||||||||||||| |    
T  46176461 attcctggtgttgagaagttttcaaggagaaaacttgtgaaaggtgatcattactttgattatgttagtgatgtcttgagcaaagtagtagctgaaccta 46176362  T
Q  338 atattctcgtccttaaagaagaagaagctgctaaagtcggtagctgcaatgaggaagagctagaaaagagatcaaatggacatgatttatctgacgatca 437  Q
    |||||||||| ||  ||||||||      |||||||| ||||||| |||||||||||| | ||||||| ||||||||| | |||||||||||||||||||    
T  46176361 atattctcgtgctcgaagaagaa------gctaaagttggtagctacaatgaggaagaaccagaaaagggatcaaatgaagatgatttatctgacgatca 46176268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 46176602 - 46176561
Alignment:
Q  54 tttgtcttctcttggaccgagtgatatattacaatctttgac 95  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  46176602 tttgtcttctcttggaccgagtgaaataatacaatctttgac 46176561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 29 - 442
Target Start/End: Complemental strand, 15769709 - 15769302
Alignment:
Q  29 cgttttcagcaccaacttgcaaatctttgtcttctcttggaccgagtgatatattacaatctttgacaggaggatttcggctgagcaaaaccaaaaataa 128  Q
    |||||| |||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||||||| ||||| |||||||||||||||||||||  |||    
T  15769709 cgtttttagcaccaacttgcaaagctttgtcttctcttggacttagtgatataatacaatctttgactggagggtttcggctgagcaaaaccaaatgtaa 15769610  T
Q  129 tgaactcttctgggaagctgtttggccgcgcttactagcaagaggatggcactctgagcaaacaaagtatcgaggatgtgttacctccgatgattatctg 228  Q
    ||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||| ||||||| | | |||||||| | |||||| ||    
T  15769609 tgatctcttctgggaagctgtttggcctcgcttactggcaagaggttggcactctgagcaaccaaagaatcgaggctatattacctccaaagattatttg 15769510  T
Q  229 gtttttcttattcctggtgttcagaagttttcaaggagaaaactagtgaaaggtaaccattactttgattcagttagcgatgtcttgaaaaaagtagtag 328  Q
    ||||||||||||||||||||| |||||||||| ||||| ||||| || |||||| | |||||||||||||| ||||| ||||||||||  ||||||| ||    
T  15769509 gtttttcttattcctggtgttgagaagttttcgaggaggaaacttgtaaaaggtcatcattactttgattctgttagtgatgtcttgagcaaagtagcag 15769410  T
Q  329 ctgaaccgaatattctcgtccttaaagaagaagaagctgctaaagtcggtagctgcaatgaggaagagctagaaaagagatcaaatggacatgatttatc 428  Q
    ||||||||||||||||||| ||    || ||||||||||   |||| |||||||| |||||||||| || ||||||| ||||||||| | ||||| ||||    
T  15769409 ctgaaccgaatattctcgtgct---cgaggaagaagctg---aagttggtagctgtaatgaggaagggccagaaaagggatcaaatgaagatgatgtatc 15769316  T
Q  429 tgacgatcatcgcc 442  Q
    ||| ||||||||||    
T  15769315 tgatgatcatcgcc 15769302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 197 - 442
Target Start/End: Complemental strand, 18376226 - 18375981
Alignment:
Q  197 atcgaggatgtgttacctccgatgattatctggtttttcttattcctggtgttcagaagttttcaaggagaaaactagtgaaaggtaaccattactttga 296  Q
    ||||||||| || ||||| ||||||||||||||||||||||||||| || ||| ||||||||||||| |||||||||||||||||| |||||||||||||    
T  18376226 atcgaggatatgctaccttcgatgattatctggtttttcttattcccggggttgagaagttttcaagaagaaaactagtgaaaggtgaccattactttga 18376127  T
Q  297 ttcagttagcgatgtcttgaaaaaagtagtagctgaaccgaatattctcgtccttaaagaagaagaagctgctaaagtcggtagctgcaatgaggaagag 396  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  18376126 ttcagttagcgatgttttgaaaaaagtagtagctgaaccgaatattctcgtcctcaaagaagaagaagcagctaaagtcggtagctgcaatgaggaagag 18376027  T
Q  397 ctagaaaagagatcaaatggacatgatttatctgacgatcatcgcc 442  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||    
T  18376026 ctagaaaaaggatcaaatggacatgatttatctgacgatcatcgcc 18375981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University