View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15962_high_21 (Length: 460)
Name: NF15962_high_21
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_high_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 35 - 452
Target Start/End: Complemental strand, 44409318 - 44408901
Alignment:
| Q |
35 |
tagtttaattaagaattttatttgtatgtnnnnnnngcataaaattgatttacagaaatattcaatcatattggaccgtttaattaattacctctggttc |
134 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44409318 |
tagtttaattaagaattttatttctatgtaaaaaaagcataaaatagatttacaaaaatattcaatcatattggaccgtttaattaattacctctggttc |
44409219 |
T |
|
| Q |
135 |
ttataggtgggttcaaaaccttcaaagcaacagaatcaataagtggaccacaagctggatcatcttcaacaccagagttatggatcacaatttccccttc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44409218 |
ttataggtgggttcaaaaccttcaaagcaacagaatcaataagtggaccacaagctggatcatcttcaacaccagagttatggatcacaatttccccttc |
44409119 |
T |
|
| Q |
235 |
tggataatcagctctaaacccacaagcaaatgattcccaaccattactaccatacatagtttgtattggaatgataccataatctcttttctcagaagtt |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44409118 |
tggataatcagctctaaacccacaagcaaatgattcccaaccattactaccatacatagtttgtattggaatgataccataatctcttttctcagaagtt |
44409019 |
T |
|
| Q |
335 |
ggtaccactgacacattaagtttctcttcttgtgcacacgtgcgagctgcactgaatgtgatggaataagatgaccctttatttaatttcactttttgct |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44409018 |
ggtaccactgacacattaagtttctcttcttgtgcacacgtgcgagctgcactgaatgtgatggaataagatgaccctttatttaatttcactttttgct |
44408919 |
T |
|
| Q |
435 |
taatgtatgcttcatttc |
452 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
44408918 |
taatgtatgcttcatttc |
44408901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 2285907 - 2285858
Alignment:
| Q |
160 |
agcaacagaatcaataagtggaccacaagctggatcatcttcaacaccag |
209 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| ||||||||||||| |
|
|
| T |
2285907 |
agcaacagaatcaataagaggaccacaagcaggatcttcttcaacaccag |
2285858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University