View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15962_high_24 (Length: 454)
Name: NF15962_high_24
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_high_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 26 - 436
Target Start/End: Complemental strand, 38943086 - 38942678
Alignment:
| Q |
26 |
actttgcacatatagttgtgctagtttgctcactttcaatgaaagttttgcttattaaaatgaaatatatgaatgtttaatgtctgatttttagagttag |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38943086 |
actttgcacatatagttgtgctagtttgctcactttcaatgaaagttttgcttattaaaatgaaatatatgaatgtttaatgtctgattt--agagttag |
38942989 |
T |
|
| Q |
126 |
ggcatatatatgtaaaactggagagccattgtatctagaaataattgtattgcctcaaataagattttgcaagatttggatcaaaatatataaaagttag |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38942988 |
ggcatatatatgtaaaactggagagccattgtatttagtaataatcgtattgtctcaaataagattttgcaagatttggatcaaaatatataaaagttag |
38942889 |
T |
|
| Q |
226 |
tcatatgcatattaattattaaatttctgaacaaaactgacaataatttaataagatagtgaatattcgtggtaatttattatattttcaaacaagtctc |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38942888 |
tcatatgcatattaattattaaatttctgaacaaaactgacaataatttaataagatagtgaatattcgtagtaatttattatattttcaaacaagtctc |
38942789 |
T |
|
| Q |
326 |
attcattctcttctatactgaaaacaaaccaaacaagagcagggtcatcctgagtctttggagcatgttacaaaacgacnnnnnnncagtgtccataatt |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38942788 |
attcattctcttctatactgaaaacaaaccaaacaagagcagggtaatcctgagtctttggagcatgttacaaaacgacaaaaaaacagtgtccataatt |
38942689 |
T |
|
| Q |
426 |
gatgtacgatg |
436 |
Q |
| |
|
||||||||||| |
|
|
| T |
38942688 |
gatgtacgatg |
38942678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 34
Target Start/End: Complemental strand, 38943751 - 38943720
Alignment:
| Q |
3 |
tatatatatgttggtttttagctactttgcac |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38943751 |
tatatatatgttggtttttagctactttgcac |
38943720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University