View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_high_26 (Length: 439)
Name: NF15962_high_26
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_high_26 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 21 - 426
Target Start/End: Complemental strand, 9526692 - 9526287
Alignment:
| Q |
21 |
atcggcatcttaaataaatatcagttatatcgtagaattagtctctgtagttgtatacggaatctgccccggctaaatcaaaaaataacccctgatcatt |
120 |
Q |
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| T |
9526692 |
atcggcatcttaaataaatatcagttatatcgtagaattagtctctgtagttgtatacggaatctgccccggttaaatcaaaaaataacccctgatcatt |
9526593 |
T |
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| Q |
121 |
taagtgtagactccagataaattcttttgacatattagatatacatgtaaattttgttgctgatataggtacagggctgttacaagtgcatactatagag |
220 |
Q |
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| T |
9526592 |
tatgtgtatactgcagataaattcttttgacatatgatatatacatgtaaattatgttgttgatataggtacagagctgtaacaagtgcatactatagag |
9526493 |
T |
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| Q |
221 |
gtgcattaggagccatgctagtatatgacataaccaaaagacaatcatttgatcatgttgctaaatgggttgaggaacttagagcacatgcagataactc |
320 |
Q |
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| T |
9526492 |
gtgcattaggagcaatgctagtatatgacataaccaaaaggcaatcttttgatcatgttgctaaatgggttgaggaacttagagcacatgcagataactc |
9526393 |
T |
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| Q |
321 |
aattgtgatcatgctagttggtaacaaaggtgaccttgttgacttgagaatggttcctactgaagatgcagttgagtttgcagaagaccaaggtttattc |
420 |
Q |
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| T |
9526392 |
aattgtgatcatgctagttggtaacaaaggtgaccttgttgatttgagaatggtccctactgaagatgcagttgagtttgcagaagaccaaggtttattc |
9526293 |
T |
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| Q |
421 |
atctca |
426 |
Q |
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| T |
9526292 |
ttctca |
9526287 |
T |
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Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 183 - 359
Target Start/End: Original strand, 48932172 - 48932348
Alignment:
| Q |
183 |
atataggtacagggctgttacaagtgcatactatagaggtgcattaggagccatgctagtatatgacataaccaaaagacaatcatttgatcatgttgct |
282 |
Q |
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| T |
48932172 |
atataggtacagagcggttacaagtgcatactacagaggagcattaggggccatgctggtgtatgacataactaaaagacaaacgtttgatcatgtagct |
48932271 |
T |
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| Q |
283 |
aaatgggttgaggaacttagagcacatgcagataactcaattgtgatcatgctagttggtaacaaaggtgaccttgt |
359 |
Q |
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| T |
48932272 |
agatggattgaggaactacggtcacacgccgacaactccatcgtgatcatgctaattggtaacaaaggtgatcttgt |
48932348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 14388 - 14479
Alignment:
| Q |
184 |
tataggtacagggctgttacaagtgcatactatagaggtgcattaggagccatgctagtatatgacataaccaaaagacaatcatttgatca |
275 |
Q |
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| T |
14388 |
tataggtacagggcagttactagtgcatactatcgaggtgcagttggggcaatgttagtttacgacatgacaaaacgtcaatcattcgatca |
14479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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