View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_high_28 (Length: 434)
Name: NF15962_high_28
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_high_28 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 8 - 434
Target Start/End: Original strand, 12469140 - 12469566
Alignment:
| Q |
8 |
agtagcataggaagtagtgtattgctcttttgaattactgttatcttgttcgctcggttttgtttacgtgttttagataatagactagcatatctcttct |
107 |
Q |
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| T |
12469140 |
agtatcataggaagtagtgtattgctcttttgaattactgttatcttgttcgctcggttttgtttacttgttttagataatagactagcatgtctcttct |
12469239 |
T |
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| Q |
108 |
ttacattgaccagggaggcctgagagacttaagctttgtttcttctaaatattttgctgcaggtggtcatctccataggcccacagaaatttcaaagaat |
207 |
Q |
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| T |
12469240 |
ttacattgaccagggaggcctgagagacttaagctttgtttcttctaaatattttgctgcaggtggtcatctccataggcccacagaaatttcaaagaat |
12469339 |
T |
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| Q |
208 |
tggaattttactccaccgaaatagttggaatggaactctgtcacctcgaagcaacgtgcctctgtttaattatccagtgattatggttgtgttctgcaga |
307 |
Q |
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| T |
12469340 |
tggaattttactccaccgaaatagttgcaatggaactctgtcacctcgaagcaacgtgcctctgtttaattatccagtgattatggctgtgttctgcaga |
12469439 |
T |
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| Q |
308 |
taagagttattaggctgcattgatagaaagcattttggttatgctacaatttcgcgtgatttatagttctggaagaacatgatgggttgatgattccata |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
12469440 |
aaagagttattaggctgcattgatagaaagcattttggttatgctacaatttcgcgtgatttatagttctggaagaacatgatgagttgatgattacata |
12469539 |
T |
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| Q |
408 |
ggtgcctttcaatgagtccttggcctt |
434 |
Q |
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| T |
12469540 |
ggtgcctttcaatgagtccttggcctt |
12469566 |
T |
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