View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15962_high_3 (Length: 588)
Name: NF15962_high_3
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 523; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 13 - 571
Target Start/End: Complemental strand, 33397630 - 33397072
Alignment:
| Q |
13 |
attctcaaaaacactaaatcaaccttaacctctctcacttgttccaacatcggctctctataccatactgacatatccttcattgccgattccttccctt |
112 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33397630 |
attctcaaaaacactaaatcaaccttgacctctctcacttgttccaacatcggctctctataccatactgacatatccttcattgccgattccttccctt |
33397531 |
T |
|
| Q |
113 |
tcctccaacaattggatatcagttaccctaaaataatcaccaatgacagcgacaattataataatgctctgaagcttctcactcaaaagctttcaaaact |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33397530 |
tcctccaacaattggatatcagttaccctaaaataatcaccaatgacagtgacaattataataatgctttgaagcttctcactcaaaagctttcaaaact |
33397431 |
T |
|
| Q |
213 |
ccgcaaggttaatctctctggtcatttctacgttaatgaatccaccttttttctattgtgtatgaactgtgtgtttctacaagaggtggttatgttccaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33397430 |
ccgcaaggttaatctctctggtcatttctacgttaatgactccaccttttttctattgtgtatgaactgtgtgtttctacaagagttggttatgttccaa |
33397331 |
T |
|
| Q |
313 |
tgccatttgctatcacgtgatggtcttgcttctgcaatacgtcagagaccaactttgaattctttctcacttacatgccgtaaggatatttcttcatact |
412 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33397330 |
tgccatttgctatcacatgatggtcttgcttctgcaatatgtcagagaccaactttgaattctttctcacttacatgccgtaaggatatttcttcatact |
33397231 |
T |
|
| Q |
413 |
tcattgattcattgctgagtttgaagagattaacttgtcttgatttgtccttttcactcatcactgacgagctgctttgcttactagcacttgaagctct |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33397230 |
ccattgattcattgctgagtttgaagagattaacttgtcttgatttgtccttttcactcatcactgacgagctgctttgcttactagcacttgaagctct |
33397131 |
T |
|
| Q |
513 |
tcctttgaggaaacttgtcctccgcaaatgcttcggacatacaaatactgggatctctt |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33397130 |
tcctttgaggaaacttgtcctccgcaaatgcttcggacatacaaatgctgggatctctt |
33397072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 36876698 - 36876469
Alignment:
| Q |
31 |
tcaaccttaacctctctcacttgttccaacatcggctctctataccatactgacatatccttcattgccgattccttccctttcctccaacaattggata |
130 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||| |||||| |
|
|
| T |
36876698 |
tcaaccttgacctctctcacatgttccaacattggctctctataccatactgacatatccttcattgctcattcttttcctttcctccaacaactggata |
36876599 |
T |
|
| Q |
131 |
tcagttaccctaaaataatcacc---aat------gacagcgacaattataataatgctctgaagcttctcactcaaaagctttcaaaactccgcaaggt |
221 |
Q |
| |
|
|||||| ||| |||| ||| ||| ||| |||| |||| ||||||||||||||| |||||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
36876598 |
tcagtttccccaaaacaataaccggtaatggctacgacactgacacttataataatgctctaaagcttcttactcaaaggctttcaaaacttcgcaaggt |
36876499 |
T |
|
| Q |
222 |
taatctctctggtcatttctacgttaatga |
251 |
Q |
| |
|
|||| |||||||| |||||||| ||||||| |
|
|
| T |
36876498 |
taatttctctggtaatttctacattaatga |
36876469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 25 - 380
Target Start/End: Original strand, 27004746 - 27005101
Alignment:
| Q |
25 |
actaaatcaaccttaacctctctcacttgttccaacatcggctctctataccatactgacatatccttcattgccgattccttccctttcctccaacaat |
124 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||||| || | ||||||| ||| ||| |||||||||| || || ||||| ||||| ||||||||||||| |
|
|
| T |
27004746 |
actaaatccaccttgacctctctcacatgttccaatatggcttctctatgccacactcacatatccttgatcgcagattcattccccttcctccaacaat |
27004845 |
T |
|
| Q |
125 |
tggatatcagttaccctaaaataatcaccaatgacagcgacaattataataatgctctgaagcttctcactcaaaagctttcaaaactccgcaaggttaa |
224 |
Q |
| |
|
|||||||||||| |||||||| ||| | | | | |||| | |||||||| ||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
27004846 |
tggatatcagtttccctaaaacaatatctggtaatgctcatgcttattacaatgctctacagcttcttactcaaaagctttcaaaactccgcaatgttaa |
27004945 |
T |
|
| Q |
225 |
tctctctggtcatttctacgttaatgaatccaccttttttctattgtgtatgaactgtgtgtttctacaagaggtggttatgttccaatgccatttgcta |
324 |
Q |
| |
|
|||||||||||||| |||| ||||||| || ||||||| | | ||| | |||||| |||||||||| | || |||||||| | ||||| || ||| |
|
|
| T |
27004946 |
tctctctggtcattcctactttaatgactctttgttttttcaactatgtgtcaactgtaagtttctacaacaagtttttatgttcgattgccaattccta |
27005045 |
T |
|
| Q |
325 |
tcacgtgatggtcttgcttctgcaatacgtcagagaccaactttgaattctttctc |
380 |
Q |
| |
|
||| ||||||| ||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
27005046 |
acacatgatggtattgcttctgcaatctaccagagacccactttgaattctttctc |
27005101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 411 - 535
Target Start/End: Original strand, 33708401 - 33708525
Alignment:
| Q |
411 |
cttcattgattcattgctgagtttgaagagattaacttgtcttgatttgtccttttcactcatcactgacgagctgctttgcttactagcacttgaagct |
510 |
Q |
| |
|
|||||||||||||||| ||||||||||| | |||||||||||||||||||||| |||| ||| ||||| | |||||| || ||| |||||| |||| |
|
|
| T |
33708401 |
cttcattgattcattgatgagtttgaagcgcttaacttgtcttgatttgtcctattcatgcattactgattcgttgctttactctctaacacttgcagct |
33708500 |
T |
|
| Q |
511 |
cttcctttgaggaaacttgtcctcc |
535 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
33708501 |
cttcctttgaggaaacttgtcctcc |
33708525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 407 - 535
Target Start/End: Original strand, 36810396 - 36810524
Alignment:
| Q |
407 |
catacttcattgattcattgctgagtttgaagagattaacttgtcttgatttgtccttttcactcatcactgacgagctgctttgcttactagcacttga |
506 |
Q |
| |
|
|||||||| |||||||||| |||||||||| |||||||||||| ||||||||| |||||| ||| |||| ||||||||| ||||||||||| |
|
|
| T |
36810396 |
catacttcgctgattcattggggagtttgaagggattaacttgtcatgatttgtctttttcatgcatttctgatttcttgctttgctctctagcacttga |
36810495 |
T |
|
| Q |
507 |
agctcttcctttgaggaaacttgtcctcc |
535 |
Q |
| |
|
|||||||||||||||| ||||| |||||| |
|
|
| T |
36810496 |
agctcttcctttgagggaacttatcctcc |
36810524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 407 - 535
Target Start/End: Complemental strand, 36876290 - 36876162
Alignment:
| Q |
407 |
catacttcattgattcattgctgagtttgaagagattaacttgtcttgatttgtccttttcactcatcactgacgagctgctttgcttactagcacttga |
506 |
Q |
| |
|
||||||| ||||||||||| |||||||||| |||||||||||||||||||||| |||||| ||| |||| ||||||||| ||||||||||| |
|
|
| T |
36876290 |
catactttgttgattcattgtggagtttgaagggattaacttgtcttgatttgtctttttcatgcatttctgatttcttgctttgctctctagcacttga |
36876191 |
T |
|
| Q |
507 |
agctcttcctttgaggaaacttgtcctcc |
535 |
Q |
| |
|
||||||||||||| |||||||| |||| |
|
|
| T |
36876190 |
cgctcttcctttgaccaaacttgttctcc |
36876162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 409 - 468
Target Start/End: Original strand, 33714265 - 33714324
Alignment:
| Q |
409 |
tacttcattgattcattgctgagtttgaagagattaacttgtcttgatttgtccttttca |
468 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| | |||||||||||||||||||||| |||| |
|
|
| T |
33714265 |
tacttcattgattcattggtgagtttaaagcgcttaacttgtcttgatttgtcctattca |
33714324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 33093071 - 33093125
Alignment:
| Q |
194 |
ctcaaaagctttcaaaactccgcaaggttaatctctctggtcatttctacgttaa |
248 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||| ||||||| ||||| |
|
|
| T |
33093071 |
ctcaaaagcttttaaaactccgcaaggttaatctctcaggtaatttctatgttaa |
33093125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 207 - 380
Target Start/End: Original strand, 36810180 - 36810353
Alignment:
| Q |
207 |
aaaactccgcaaggttaatctctctggtcatttctacgttaatgaatccaccttttttctattgtgtatgaactgtgtgtttctacaagaggtggttatg |
306 |
Q |
| |
|
|||||||| ||||||||| ||||||||| ||||||| || |||| || ||||| | |||| | |||||||| | || || |||||||||||||| |
|
|
| T |
36810180 |
aaaactccacaaggttaacctctctggtaatttctatattgatgattcattgtttttggaactgtgcaggaactgtgagcttttagaagaggtggttatg |
36810279 |
T |
|
| Q |
307 |
ttccaatgccatttgctatcacgtgatggtcttgcttctgcaatacgtcagagaccaactttgaattctttctc |
380 |
Q |
| |
|
||| | |||| ||| ||| |||||| |||| ||||| ||||||| | |||||||| |||||||||||| |||| |
|
|
| T |
36810280 |
ttcgattgccctttcctaacacgtgctggtattgctactgcaatttgccagagacccactttgaattctctctc |
36810353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 37579955 - 37580008
Alignment:
| Q |
175 |
aatgctctgaagcttctcactcaaaagctttcaaaactccgcaaggttaatctc |
228 |
Q |
| |
|
|||||||| ||| |||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37579955 |
aatgctctaaaggttcttactcaaaagctttcaaaactctgcaaggttaatctc |
37580008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 309
Target Start/End: Original strand, 33708173 - 33708281
Alignment:
| Q |
201 |
gctttcaaaactccgcaaggttaatctctctggtcatttctacgttaatgaatccaccttttttctattgtgtatgaactgtgtgtttctacaagaggtg |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||| ||| |||||| ||||| || ||||||| | ||||||||||| |||||| ||||||||| |
|
|
| T |
33708173 |
gctttcaaaactccgtaaggttaatctctccggtaattcctacgtaaatgactcattgttttttcagctatgtatgaactgcaagtttctccaagaggtg |
33708272 |
T |
|
| Q |
301 |
gttatgttc |
309 |
Q |
| |
|
|||||||| |
|
|
| T |
33708273 |
cttatgttc |
33708281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 403 - 531
Target Start/End: Original strand, 18723712 - 18723840
Alignment:
| Q |
403 |
tcttcatacttcattgattcattgctgagtttgaagagattaacttgtcttgatttgtccttttcactcatcactgacgagctgctttgcttactagcac |
502 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | |||||||||||||| |||||||||| ||| ||||| ||||||||| ||||||| |
|
|
| T |
18723712 |
tcttcatacttcattgattcattggcgagtttgaagcgcttaacttgtcttgaccagtccttttcatgcattactgatttcttgctttgctctctagcac |
18723811 |
T |
|
| Q |
503 |
ttgaagctcttcctttgaggaaacttgtc |
531 |
Q |
| |
|
||||||||||||||||||| ||||||||| |
|
|
| T |
18723812 |
ttgaagctcttcctttgagcaaacttgtc |
18723840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 188 - 281
Target Start/End: Original strand, 18723550 - 18723643
Alignment:
| Q |
188 |
ttctcactcaaaagctttcaaaactccgcaaggttaatctctctggtcatttctacgttaatgaatccaccttttttctattgtgtatgaactg |
281 |
Q |
| |
|
|||| ||||||| |||||||||||||||||| |||||||| |||||| || ||||| ||||||| || ||||||| | ||||||||||||| |
|
|
| T |
18723550 |
ttcttactcaaaggctttcaaaactccgcaaagttaatctttctggtaatatctacattaatgattcattgttttttcaactgtgtatgaactg |
18723643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 461
Target Start/End: Original strand, 3438016 - 3438072
Alignment:
| Q |
405 |
ttcatacttcattgattcattgctgagtttgaagagattaacttgtcttgatttgtc |
461 |
Q |
| |
|
|||| |||||||||| | ||| ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
3438016 |
ttcacacttcattgacttgttggtgagtctgaagggattaacttgtcttgatttgtc |
3438072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University